contig_metadata
24 rows where analysis = "blastn", bioproject = "PRJNA951388" and tax_kingdom = "Bacillati"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 934758 | 934758 | PRJNA951388_S_NODE_11301_length_243_cov_1.358824_g11174_i0 | PRJNA951388 | 11301 | 243 | 1.358824 | 3.30194232 | Rhodococcus sp. DN22 | 357684 | Bacteria | Bacteria | 449 | 6.65e-122 | NTclustered | gi|2675877924|gb|CP133326.1| | 357684 | g11174 | i0 | 100 | 48 | 243 | 0 | 100 | 0 | 1 | 243 | 4270423 | 4270181 | Rhodococcus sp. DN22 strain strain DN22 chromosome, complete genome | blastn | 11664 | 449 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Nocardiaceae | Rhodococcus | Rhodococcus sp. DN22 | ||
| 2210015 | 2210015 | PRJNA951388_S_NODE_10322_length_256_cov_5.344262_g10195_i0 | PRJNA951388 | 10322 | 256 | 5.344262 | 13.68131072 | Mycoplasma wenyonii | 65123 | Bacteria | Bacteria | 440 | 4.249999999999998e-119 | NTclustered | gi|395455868|gb|CP003703.1| | 1197325 | g10195 | i0 | 97.656 | 1 | 256 | 6 | 100 | 0 | 1 | 256 | 397112 | 397367 | Mycoplasma wenyonii str. Massachusetts, complete genome | blastn | 256 | 440 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mollicutes | Mycoplasmatales | Mycoplasmataceae | Mycoplasma | Mycoplasma wenyonii | ||
| 3814793 | 3814793 | PRJNA951388_S_NODE_10503_length_254_cov_2.232044_g10376_i0 | PRJNA951388 | 10503 | 254 | 2.232044 | 5.66939176 | Paenibacillus | 44249 | Bacteria | Bacteria | 451 | 1.95e-122 | NTclustered | gi|2700521045|gb|CP147845.1| | 59843 | g10376 | i0 | 98.819 | 4.97637795275591 | 254 | 2 | 100 | 1 | 1 | 254 | 3891529 | 3891781 | Paenibacillus glucanolyticus strain GlSt238 chromosome, complete genome | blastn | 1264 | 451 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Paenibacillus | Paenibacillus glucanolyticus | ||
| 3814796 | 3814796 | PRJNA951388_S_NODE_3983_length_408_cov_2.591045_g3856_i0 | PRJNA951388 | 3983 | 408 | 2.591045 | 10.5714636 | Cutibacterium | 1912216 | Bacteria | Bacteria | 754 | 0 | NTclustered | gi|2548746222|gb|CP129004.1| | 1747 | g3856 | i0 | 100 | 273.882352941176 | 408 | 0 | 100 | 0 | 1 | 408 | 608485 | 608892 | Cutibacterium acnes strain EASDk81B chromosome, complete genome | blastn | 111744 | 754 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Propionibacteriales | Propionibacteriaceae | Cutibacterium | Cutibacterium acnes | ||
| 5091099 | 5091099 | PRJNA951388_S_NODE_6004_length_346_cov_1.974359_g5877_i0 | PRJNA951388 | 6004 | 346 | 1.974359 | 6.83128214 | Paenibacillus | 44249 | Bacteria | Bacteria | 623 | 5.529999999999999e-174 | NTclustered | gi|2700521045|gb|CP147845.1| | 59843 | g5877 | i0 | 99.133 | 5 | 346 | 3 | 100 | 0 | 1 | 346 | 1480794 | 1481139 | Paenibacillus glucanolyticus strain GlSt238 chromosome, complete genome | blastn | 1730 | 623 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Paenibacillus | Paenibacillus glucanolyticus | ||
| 6037878 | 6037878 | PRJNA951388_S_NODE_11765_length_235_cov_3.783951_g11638_i0 | PRJNA951388 | 11765 | 235 | 3.783951 | 8.89228485 | Staphylococcus cohnii | 29382 | Bacteria | Bacteria | 435 | 1.79e-117 | NTclustered | gi|1373834432|emb|LT963440.1| | 29382 | g11638 | i0 | 100 | 99.2255319148936 | 235 | 0 | 100 | 0 | 1 | 235 | 538828 | 538594 | Staphylococcus cohnii isolate Staphylococcus cohnii ATCC 29974 genome assembly, chromosome: I | blastn | 23318 | 435 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus cohnii | ||
| 6037898 | 6037898 | PRJNA951388_S_NODE_8705_length_285_cov_1.816038_g8578_i0 | PRJNA951388 | 8705 | 285 | 1.816038 | 5.1757083 | uncultured Chroococcidiopsis sp. | 259957 | Bacteria | Bacteria | 387 | 6.349999999999998e-103 | NTclustered | gi|225696185|gb|FJ805852.1| | 259957 | g8578 | i0 | 91.228 | 134.126315789474 | 285 | 24 | 99 | 1 | 1 | 284 | 1774 | 2058 | Uncultured Chroococcidiopsis sp. clone AR1_3 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | blastn | 38226 | 387 | 1 | Bacteria | Cyanobacteriota/Melainabacteria group | Bacillati | Cyanobacteriota | Cyanophyceae | Chroococcidiopsidales | Chroococcidiopsidaceae | Chroococcidiopsis | uncultured Chroococcidiopsis sp. | |
| 6366800 | 6366800 | PRJNA951388_S_NODE_10925_length_248_cov_1.245714_g10798_i0 | PRJNA951388 | 10925 | 248 | 1.245714 | 3.08937072 | Bacillales | 1385 | Bacteria | Bacteria | 459 | 1.13e-124 | NTclustered | gi|2692800537|gb|CP146065.1| | 1283 | g10798 | i0 | 100 | 471.778225806452 | 248 | 0 | 100 | 0 | 1 | 248 | 771518 | 771765 | Staphylococcus haemolyticus strain SPS12 chromosome, complete genome | blastn | 117001 | 459 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus haemolyticus | ||
| 7640721 | 7640721 | PRJNA951388_S_NODE_11786_length_235_cov_2.364198_g11659_i0 | PRJNA951388 | 11786 | 235 | 2.364198 | 5.5558653 | Kocuria | 57493 | Bacteria | Bacteria | 435 | 1.79e-117 | NTclustered | gi|1540076968|emb|LR134391.1| | 1275 | g11659 | i0 | 100 | 270.527659574468 | 235 | 0 | 100 | 0 | 1 | 235 | 1080204 | 1080438 | Kocuria rosea strain NCTC7514 genome assembly, chromosome: 1 | blastn | 63574 | 435 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Kocuria | Kocuria rosea | ||
| 7640724 | 7640724 | PRJNA951388_S_NODE_2646_length_469_cov_2.732323_g2519_i0 | PRJNA951388 | 2646 | 469 | 2.732323 | 12.81459487 | Corynebacterium | 1716 | Bacteria | Bacteria | 771 | 0 | NTclustered | gi|1958403034|gb|CP068165.1| | 169292 | g2519 | i0 | 96.391 | 401.92750533049 | 471 | 12 | 100 | 5 | 1 | 469 | 400190 | 399723 | Corynebacterium aurimucosum strain FDAARGOS_1110 chromosome, complete genome | blastn | 188504 | 771 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Corynebacteriaceae | Corynebacterium | Corynebacterium aurimucosum | ||
| 11138416 | 11138416 | PRJNA951388_S_NODE_9969_length_262_cov_1.201058_g9842_i0 | PRJNA951388 | 9969 | 262 | 1.201058 | 3.14677196 | Paenibacillus glucanolyticus | 59843 | Bacteria | Bacteria | 484 | 1.99e-132 | NTclustered | gi|2700521045|gb|CP147845.1| | 59843 | g9842 | i0 | 100 | 5 | 262 | 0 | 100 | 0 | 1 | 262 | 3900129 | 3900390 | Paenibacillus glucanolyticus strain GlSt238 chromosome, complete genome | blastn | 1310 | 484 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Paenibacillus | Paenibacillus glucanolyticus | ||
| 12413841 | 12413841 | PRJNA951388_S_NODE_2990_length_452_cov_2.266491_g2863_i0 | PRJNA951388 | 2990 | 452 | 2.266491 | 10.24453932 | uncultured Chroococcidiopsis sp. | 259957 | Bacteria | Bacteria | 643 | 5.679999999999999e-180 | NTclustered | gi|225696260|gb|FJ805927.1| | 259957 | g2863 | i0 | 92.308 | 129.860619469027 | 455 | 31 | 100 | 3 | 1 | 452 | 3061 | 3514 | Uncultured Chroococcidiopsis sp. clone AS3_3 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | blastn | 58697 | 643 | 1 | Bacteria | Cyanobacteriota/Melainabacteria group | Bacillati | Cyanobacteriota | Cyanophyceae | Chroococcidiopsidales | Chroococcidiopsidaceae | Chroococcidiopsis | uncultured Chroococcidiopsis sp. | |
| 12413860 | 12413860 | PRJNA951388_S_NODE_7950_length_300_cov_1.356828_g7823_i0 | PRJNA951388 | 7950 | 300 | 1.356828 | 4.070484 | Dolosigranulum pigrum | 29394 | Bacteria | Bacteria | 555 | 1.7399999999999995e-153 | NTclustered | gi|2020672664|gb|CP040417.1| | 29394 | g7823 | i0 | 100 | 25 | 300 | 0 | 100 | 0 | 1 | 300 | 1749628 | 1749329 | Dolosigranulum pigrum strain KPL3077 chromosome | blastn | 7500 | 555 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Carnobacteriaceae | Dolosigranulum | Dolosigranulum pigrum | ||
| 12413864 | 12413864 | PRJNA951388_S_NODE_8930_length_280_cov_3.946860_g8803_i0 | PRJNA951388 | 8930 | 280 | 3.94686 | 11.051208 | Lawsonella clevelandensis | 1528099 | Bacteria | Bacteria | 484 | 2.15e-132 | NTclustered | gi|1723592958|emb|LR584267.1| | 1528099 | g8803 | i0 | 97.857 | 327.960714285714 | 280 | 6 | 100 | 0 | 1 | 280 | 552129 | 551850 | Lawsonella clevelandensis isolate USB-603019 genome assembly, chromosome: 1 | blastn | 91829 | 484 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Lawsonellaceae | Lawsonella | Lawsonella clevelandensis | ||
| 12413866 | 12413866 | PRJNA951388_S_NODE_9710_length_266_cov_1.797927_g9583_i0 | PRJNA951388 | 9710 | 266 | 1.797927 | 4.78248582 | Faecalibacterium prausnitzii | 853 | Bacteria | Bacteria | 486 | 5.629999999999999e-133 | NTclustered | gi|2094528057|gb|CP065376.1| | 853 | g9583 | i0 | 99.624 | 374.65037593985 | 266 | 1 | 100 | 0 | 1 | 266 | 1907144 | 1907409 | Faecalibacterium prausnitzii strain Fp360 chromosome, complete genome | blastn | 99657 | 486 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Oscillospiraceae | Faecalibacterium | Faecalibacterium prausnitzii | ||
| 13688414 | 13688414 | PRJNA951388_S_NODE_7631_length_307_cov_2.303419_g7504_i0 | PRJNA951388 | 7631 | 307 | 2.303419 | 7.07149633 | Mammaliicoccus stepanovicii | 643214 | Bacteria | Bacteria | 52.8 | 0.029 | NTclustered | gi|1231729876|emb|LT906462.1| | 643214 | g7504 | i0 | 94.286 | 0.11400651465798 | 35 | 1 | 11 | 1 | 108 | 142 | 1704667 | 1704700 | Staphylococcus stepanovicii strain NCTC13839 genome assembly, chromosome: 1 | blastn | 35 | 52.8 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Mammaliicoccus | Mammaliicoccus stepanovicii | ||
| 16565290 | 16565290 | PRJNA951388_S_NODE_6633_length_330_cov_1.354086_g6506_i0 | PRJNA951388 | 6633 | 330 | 1.354086 | 4.4684838 | Streptococcus | 1301 | Bacteria | Bacteria | 610 | 4.09e-170 | NTclustered | gi|2288405307|gb|CP076703.1| | 1335 | g6506 | i0 | 100 | 538.990909090909 | 330 | 0 | 100 | 0 | 1 | 330 | 19075 | 19404 | Streptococcus equinus strain S1 chromosome, complete genome | blastn | 177867 | 610 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus equinus | ||
| 17512877 | 17512877 | PRJNA951388_S_NODE_13054_length_204_cov_23.015267_g12927_i0 | PRJNA951388 | 13054 | 204 | 23.015267 | 46.95114468 | Caloranaerobacter azorensis | 116090 | Bacteria | Bacteria | 54.7 | 0.005 | NTclustered | gi|1810187734|gb|CP048617.1| | 116090 | g12927 | i0 | 100 | 0.142156862745098 | 29 | 0 | 14 | 0 | 47 | 75 | 1707585 | 1707613 | Caloranaerobacter azorensis strain T3-1 chromosome, complete genome | blastn | 29 | 54.7 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Tissierellales | Thermohalobacteraceae | Caloranaerobacter | Caloranaerobacter azorensis | ||
| 19114105 | 19114105 | PRJNA951388_S_NODE_7635_length_307_cov_1.970085_g7508_i0 | PRJNA951388 | 7635 | 307 | 1.970085 | 6.04816095 | Staphylococcus | 1279 | Bacteria | Bacteria | 568 | 2.3e-157 | NTclustered | gi|2521904872|gb|CP127705.1| | 1280 | g7508 | i0 | 100 | 506.026058631922 | 307 | 0 | 100 | 0 | 1 | 307 | 2019802 | 2020108 | Staphylococcus aureus strain C351 chromosome, complete genome | blastn | 155350 | 568 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus aureus | ||
| 21336811 | 21336811 | PRJNA951388_S_NODE_11037_length_246_cov_3.115607_g10910_i0 | PRJNA951388 | 11037 | 246 | 3.115607 | 7.66439322 | Caproiciproducens sp. CPB-2 | 3030017 | Bacteria | Bacteria | 56.5 | 0.002 | NTclustered | gi|2663189403|gb|CP142860.1| | 3030017 | g10910 | i0 | 100 | 0.121951219512195 | 30 | 0 | 12 | 0 | 67 | 96 | 1892626 | 1892655 | Caproiciproducens sp. CPB-2 chromosome, complete genome | blastn | 30 | 56.5 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Acutalibacteraceae | Caproiciproducens | Caproiciproducens sp. CPB-2 | ||
| 22940506 | 22940506 | PRJNA951388_S_NODE_12538_length_219_cov_4.500000_g12411_i0 | PRJNA951388 | 12538 | 219 | 4.5 | 9.855 | Cutibacterium | 1912216 | Bacteria | Bacteria | 383 | 6.05e-102 | NTclustered | gi|1446500593|gb|CP031442.1| | 1747 | g12411 | i0 | 98.182 | 239.936073059361 | 220 | 3 | 100 | 1 | 1 | 219 | 55619 | 55838 | Cutibacterium acnes strain KCOM 1315 chromosome, complete genome | blastn | 52546 | 383 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Propionibacteriales | Propionibacteriaceae | Cutibacterium | Cutibacterium acnes | ||
| 22940511 | 22940511 | PRJNA951388_S_NODE_5498_length_360_cov_3.473868_g5371_i0 | PRJNA951388 | 5498 | 360 | 3.473868 | 12.5059248 | Paenibacillus | 44249 | Bacteria | Bacteria | 654 | 0 | NTclustered | gi|2700521045|gb|CP147845.1| | 59843 | g5371 | i0 | 99.444 | 13.7638888888889 | 360 | 2 | 100 | 0 | 1 | 360 | 4099727 | 4100086 | Paenibacillus glucanolyticus strain GlSt238 chromosome, complete genome | blastn | 4955 | 654 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Paenibacillus | Paenibacillus glucanolyticus | ||
| 22940520 | 22940520 | PRJNA951388_S_NODE_8658_length_286_cov_1.784038_g8531_i0 | PRJNA951388 | 8658 | 286 | 1.784038 | 5.10234868 | Cellulomonas | 1707 | Bacteria | Bacteria | 529 | 1e-145 | NTclustered | gi|2571366987|gb|OR498076.1| | 40001 | g8531 | i0 | 100 | 103 | 286 | 0 | 100 | 0 | 1 | 286 | 874 | 589 | Cellulomonas sp. strain ATA003 16S ribosomal RNA gene, partial sequence | blastn | 29458 | 529 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Cellulomonadaceae | Cellulomonas | Cellulomonas sp. | ||
| 25489293 | 25489293 | PRJNA951388_S_NODE_10680_length_251_cov_2.960674_g10553_i0 | PRJNA951388 | 10680 | 251 | 2.960674 | 7.43129174 | Mycoplasma | 2093 | Bacteria | Bacteria | 464 | 2.47e-126 | NTclustered | gi|470490338|ref|NR_076982.1| | 65123 | g10553 | i0 | 100 | 126.051792828685 | 251 | 0 | 100 | 0 | 1 | 251 | 2741 | 2491 | Mycoplasma wenyonii strain Massachusetts 23S ribosomal RNA gene, complete sequence | blastn | 31639 | 464 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mollicutes | Mycoplasmatales | Mycoplasmataceae | Mycoplasma | Mycoplasma wenyonii |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;