RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA951388" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA951388 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4763114 4763114 PRJNA951388_S_NODE_5664_length_356_cov_2.233216_g5537_i0 PRJNA951388 5664 356 2.233216 7.95024896 Kentrophoros sp. 1 BS-2022 2930470 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.009   NTclustered gi|2261268989|emb|OX095830.1| 2930470 g5537 i0 100 0.415730337078652 29 0 8 0 1 29 10 38 Kentrophoros sp. 1 BS-2022 partial 18S rRNA gene, isolate SAMEA13863266, clone N10:18S_rRNA::TRINITY_DN246_c0_g1_i2:46-1672(+) blastn 148 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Kentrophoridae Kentrophoros Kentrophoros sp. 1 BS-2022
6037882 6037882 PRJNA951388_S_NODE_2465_length_480_cov_5.017199_g2338_i0 PRJNA951388 2465 480 5.017199 24.0825552 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.047   NTclustered gi|829187266|ref|XM_001033288.2| 312017 g2338 i0 100 0.0583333333333333 28 0 6 0 166 193 1611 1584 Tetrahymena thermophila SB210 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
8587736 8587736 PRJNA951388_S_NODE_7467_length_311_cov_1.268908_g7340_i0 PRJNA951388 7467 311 1.268908 3.94630388 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.008   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g7340 i0 100 0.183279742765273 29 0 9 0 1 29 9 37 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 57 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022
18786480 18786480 PRJNA951388_S_NODE_10435_length_255_cov_1.582418_g10308_i0 PRJNA951388 10435 255 1.582418 4.0351659 Torodinium robustum 1641413 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|2630987758|gb|OR921549.1| 1641413 g10308 i0 100 0.113725490196078 29 0 11 0 227 255 1687 1715 Torodinium robustum isolate Tro-QI4 small subunit ribosomal RNA gene, partial sequence blastn 29 54.7 1 Eukaryota Sar     Dinophyceae Torodiniales Torodiniaceae Torodinium Torodinium robustum
18786498 18786498 PRJNA951388_S_NODE_6335_length_337_cov_20.878788_g6208_i0 PRJNA951388 6335 337 20.878788 70.36151556 Phalacroma oxytoxoides 447216 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.032   NTclustered gi|2742502725|gb|PP905714.1| 447216 g6208 i0 100 0.166172106824926 28 0 8 0 305 332 1225 1198 Phalacroma oxytoxoides isolate PhaFC3 small subunit ribosomal RNA gene, partial sequence blastn 56 52.8 1 Eukaryota Sar     Dinophyceae Dinophysales Dinophysaceae Phalacroma Phalacroma oxytoxoides
25160893 25160893 PRJNA951388_S_NODE_8700_length_285_cov_2.537736_g8573_i0 PRJNA951388 8700 285 2.537736 7.2325476 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g8573 i0 100 0.2 29 0 10 0 257 285 37 9 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 57 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;