RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA950981" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA950981 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8586834 8586834 PRJNA950981_P_NODE_21907_length_238_cov_4.575758_g21731_i0 PRJNA950981 21907 238 4.575758 10.89030404 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 407 3.9599999999999994e-109   NTclustered gi|68479954|gb|DQ076149.1| 6182 g21731 i0 97.479 1 238 6 100 0 1 238 12 249 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 238 407 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
10191242 10191242 PRJNA950981_P_NODE_7348_length_365_cov_2.527397_g7172_i0 PRJNA950981 7348 365 2.527397 9.22499905 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 60.2 2.07e-4   NTclustered gi|2224869|gb|U53001.1|DLU53001 27895 g7172 i0 100 8.91506849315068 32 0 9 0 220 251 80 111 Dendrocoelum lacteum ribosomal RNA large subunit gene, partial sequence blastn 3254 60.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dendrocoelidae Dendrocoelum Dendrocoelum lacteum
16565030 16565030 PRJNA950981_P_NODE_8733_length_340_cov_1.460674_g8557_i0 PRJNA950981 8733 340 1.460674 4.9662916 Metazoa 33208 Platyhelminthes Platyhelminthes 628 1.1699999999999999e-175   NTclustered gi|60687563|gb|AY914894.1| 6182 g8557 i0 100 100 340 0 100 0 1 340 526 187 Schistosoma japonicum unknown mRNA blastn 34000 628 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;