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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA950981" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA950981 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
933887 933887 PRJNA950981_P_NODE_5121_length_429_cov_2.662921_g4945_i0 PRJNA950981 5121 429 2.662921 11.42393109 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 239 2.9600000000000003e-58   NTclustered gi|2794921140|ref|XM_067880775.1| 164328 g4945 i0 77.251 17.3263403263403 422 86 97 8 8 424 444 28 Phytophthora ramorum 60S ribosomal protein L19-2 (KRP23_10338), partial mRNA blastn 7433 239 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
3484506 3484506 PRJNA950981_P_NODE_17343_length_251_cov_0.876404_g17167_i0 PRJNA950981 17343 251 0.876404 2.19977404 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 398 2.5399999999999994e-106   NTclustered gi|166035484|emb|CU354363.1| 100861 g17167 i0 95.219 100 251 12 100 0 1 251 542 792 Aphanomyces euteiches cDNA blastn 25100 398 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
3814549 3814549 PRJNA950981_P_NODE_18763_length_248_cov_0.891429_g18587_i0 PRJNA950981 18763 248 0.891429 2.21074392 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 451 1.89e-122   NTclustered gi|363498776|gb|JN662487.1| 120398 g18587 i0 99.595 100.725806451613 247 1 99 0 1 247 475 721 Aphanomyces stellatus strain GF 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 24980 453 0.995584988962472 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
4762234 4762234 PRJNA950981_P_NODE_1064_length_889_cov_2.412990_g931_i0 PRJNA950981 1064 889 2.41299 21.4514811 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 303 2.24e-77   NTclustered gi|695375284|ref|XM_009517214.1| 67593 g931 i0 79.717 21.4105736782902 424 82 47 4 272 693 422 1 Phytophthora sojae hypothetical protein partial mRNA blastn 19034 303 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
7311902 7311902 PRJNA950981_P_NODE_6186_length_394_cov_1.461059_g6010_i0 PRJNA950981 6186 394 1.461059 5.75657246 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 250 1.25e-61   NTclustered gi|813142527|ref|XM_012343931.1| 695850 g6010 i0 80.363 78.6421319796954 331 63 84 2 3 332 914 585 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA blastn 30985 250 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
9861852 9861852 PRJNA950981_P_NODE_14288_length_273_cov_1.025000_g14112_i0 PRJNA950981 14288 273 1.025 2.79825 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 411 3.5899999999999996e-110   NTclustered gi|166048962|emb|CU355871.1| 100861 g14112 i0 93.773 71.970695970696 273 17 100 0 1 273 405 677 Aphanomyces euteiches cDNA blastn 19648 411 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
9861868 9861868 PRJNA950981_P_NODE_18508_length_249_cov_0.886364_g18332_i0 PRJNA950981 18508 249 0.886364 2.20704636 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 355 1.53e-93   NTclustered gi|673032447|ref|XM_008871963.1| 157072 g18332 i0 92.369 6.50200803212851 249 19 100 0 1 249 156 404 Aphanomyces invadans hypothetical protein mRNA blastn 1619 355 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
11466285 11466285 PRJNA950981_P_NODE_2669_length_584_cov_3.459883_g2496_i0 PRJNA950981 2669 584 3.459883 20.20571672 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 383 1.8e-101   NTclustered gi|2795036581|ref|XM_067936511.1| 4785 g2496 i0 81.838 109.823630136986 457 81 78 2 107 562 636 181 Phytophthora cinnamomi Adenosylhomocysteinase (IUM83_11919), partial mRNA blastn 64137 383 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
13687493 13687493 PRJNA950981_P_NODE_16171_length_255_cov_1.714286_g15995_i0 PRJNA950981 16171 255 1.714286 4.3714293 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 248 2.75e-61   NTclustered gi|673015481|ref|XM_008863480.1| 157072 g15995 i0 92.941 53.6705882352941 170 12 67 0 86 255 401 232 Aphanomyces invadans 60S ribosomal protein L44 mRNA blastn 13686 248 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
14961687 14961687 PRJNA950981_P_NODE_8232_length_348_cov_2.654545_g8056_i0 PRJNA950981 8232 348 2.654545 9.2378166 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 209 1.85e-49   NTclustered gi|675204844|ref|XM_008913059.1| 761204 g8056 i0 78.378 9.35057471264368 333 64 95 8 1 329 441 113 Phytophthora parasitica INRA-310 ribosomal protein S4 mRNA blastn 3254 209 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
15290418 15290418 PRJNA950981_P_NODE_8692_length_341_cov_1.145522_g8516_i0 PRJNA950981 8692 341 1.145522 3.90623002 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 279 1.36e-70   NTclustered gi|695406619|ref|XM_009525862.1| 67593 g8516 i0 81.873 31.8357771260997 331 60 97 0 8 338 950 1280 Phytophthora sojae hypothetical protein partial mRNA blastn 10856 279 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
16236696 16236696 PRJNA950981_P_NODE_21813_length_242_cov_0.923077_g21637_i0 PRJNA950981 21813 242 0.923077 2.23384634 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 327 3.23e-85   NTclustered gi|673039862|ref|XM_008875670.1| 157072 g21637 i0 91.25 24.8512396694215 240 21 99 0 3 242 396 635 Aphanomyces invadans guanine nucleotide-binding protein subunit beta-like protein mRNA blastn 6014 327 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
20060499 20060499 PRJNA950981_P_NODE_17416_length_251_cov_0.876404_g17240_i0 PRJNA950981 17416 251 0.876404 2.19977404 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 331 2.6100000000000006e-86   NTclustered gi|166039189|emb|CU355239.1| 100861 g17240 i0 90.476 34.4501992031873 252 22 100 2 1 251 542 292 Aphanomyces euteiches cDNA blastn 8647 331 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
23886213 23886213 PRJNA950981_P_NODE_19019_length_248_cov_0.891429_g18843_i0 PRJNA950981 19019 248 0.891429 2.21074392 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 311 3.35e-80   NTclustered gi|673052654|ref|XM_008882066.1| 157072 g18843 i0 90.598 20.6129032258065 234 22 94 0 1 234 264 31 Aphanomyces invadans 40S ribosomal protein S15a, variant mRNA blastn 5112 311 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
23886219 23886219 PRJNA950981_P_NODE_21139_length_243_cov_0.917647_g20963_i0 PRJNA950981 21139 243 0.917647 2.22988221 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 183 7.44e-42   NTclustered gi|698783094|ref|XM_009826289.1| 112090 g20963 i0 94.167 43.2880658436214 120 7 49 0 123 242 498 379 Aphanomyces astaci 40S ribosomal protein S23 mRNA blastn 10519 183 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
23886226 23886226 PRJNA950981_P_NODE_5599_length_412_cov_2.616519_g5423_i0 PRJNA950981 5599 412 2.616519 10.78005828 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 315 4.569999999999999e-81   NTclustered gi|2795040529|ref|XM_067944818.1| 4785 g5423 i0 81.462 56.5509708737864 383 71 93 0 6 388 10 392 Phytophthora cinnamomi 60S ribosomal protein L23 (IUM83_19754), partial mRNA blastn 23299 315 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;