RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA950981" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA950981 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2209177 2209177 PRJNA950981_P_NODE_4242_length_468_cov_1.501266_g4067_i0 PRJNA950981 4242 468 1.501266 7.02592488 Caenorhabditis briggsae 6238 Nematoda Nematoda 254 1.16e-62   NTclustered gi|268580870|ref|XM_002645372.1| 6238 g4067 i0 82.807 15.7029914529915 285 48 61 1 56 339 938 654 Caenorhabditis briggsae Protein CBR-SAMS-1 (Cbr-sams-1), partial mRNA blastn 7349 254 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
16236710 16236710 PRJNA950981_P_NODE_7813_length_356_cov_1.840989_g7637_i0 PRJNA950981 7813 356 1.840989 6.55392084 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 183 1.15e-41   NTclustered gi|150984457|gb|EF634871.1| 452809 g7637 i0 77.492 26.0056179775281 311 66 87 3 48 356 329 21 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 9258 183 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
21335970 21335970 PRJNA950981_P_NODE_6677_length_380_cov_1.599349_g6501_i0 PRJNA950981 6677 380 1.599349 6.0775262 Diplogastrellus gracilis 669117 Nematoda Nematoda 206 2.63e-48   NTclustered gi|256709130|gb|GQ422217.1| 669117 g6501 i0 79.47 66.2263157894737 302 52 78 8 36 332 427 723 Diplogastrellus gracilis large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 25166 206 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus gracilis
21335972 21335972 PRJNA950981_P_NODE_7217_length_368_cov_1.586441_g7041_i0 PRJNA950981 7217 368 1.586441 5.83810288 Pristionchus pauli 376545 Nematoda Nematoda 230 1.4999999999999999e-55   NTclustered gi|150982019|gb|EF634598.1| 376545 g7041 i0 80.323 5.33423913043478 310 55 83 6 62 368 37 343 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 1963 230 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;