RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA950981" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA950981 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6037007 6037007 PRJNA950981_P_NODE_5885_length_403_cov_1.412121_g5709_i0 PRJNA950981 5885 403 1.412121 5.69084763 Micromonas commoda 296587 Plants Plants 65.8 4.96e-6   NTclustered gi|255081836|ref|XM_002508091.1| 296587 g5709 i0 100 0.086848635235732 35 0 9 0 48 82 688 722 Micromonas commoda predicted protein partial mRNA blastn 35 65.8 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
9861860 9861860 PRJNA950981_P_NODE_17388_length_251_cov_0.876404_g17212_i0 PRJNA950981 17388 251 0.876404 2.19977404 Chlamydomonas reinhardtii 3055 Plants Plants 163 1.01e-35   NTclustered gi|2082248650|ref|XM_043063418.1| 3055 g17212 i0 80.374 27.1434262948207 214 42 85 0 26 239 857 644 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g290950v5), mRNA blastn 6813 163 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
12741783 12741783 PRJNA950981_P_NODE_20670_length_244_cov_0.912281_g20494_i0 PRJNA950981 20670 244 0.912281 2.22596564 Eukaryota 2759 Plants Plants 62.1 3.66e-5   NTclustered gi|297592032|gb|GU784915.1| 3068 g20494 i0 100 4.56967213114754 33 0 14 0 154 186 61233 61201 Volvox carteri f. nagariensis female mating type locus, complete sequence blastn 1115 62.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;