RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA950981" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA950981 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2209148 2209148 PRJNA950981_P_NODE_15322_length_263_cov_1.410526_g15146_i0 PRJNA950981 15322 263 1.410526 3.70968338 Achnanthes kuwaitensis 483531 SAR_Eukaryotes SAR_Eukaryotes 241 4.77e-59   NTclustered gi|225685850|dbj|AB461923.1| 483531 g15146 i0 83.206 91.1596958174905 262 44 99 0 1 262 162 423 Achnanthes kuwaitensis MAT mRNA for methionine S-adenosyl transferase, complete cds blastn 23975 241 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Mastogloiales Achnanthaceae Achnanthes Achnanthes kuwaitensis
14961681 14961681 PRJNA950981_P_NODE_5172_length_427_cov_1.788136_g4996_i0 PRJNA950981 5172 427 1.788136 7.63534072 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 246 1.76e-60   NTclustered gi|657012465|gb|KF302574.1| 2850 g4996 i0 80.06 3.72131147540984 336 64 79 2 83 418 335 3 Phaeodactylum tricornutum clone C567 ribosomal protein mRNA, partial cds blastn 1589 246 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;