RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA950981" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA950981 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2209152 2209152 PRJNA950981_P_NODE_17142_length_252_cov_0.871508_g16966_i0 PRJNA950981 17142 252 0.871508 2.19620016 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 141 4.74e-29   NTclustered gi|551604089|ref|XM_005783475.1| 280463 g16966 i0 79.803 7.57142857142857 203 33 79 7 9 207 877 679 Emiliania huxleyi CCMP1516 calreticulin (CRT-1), mRNA blastn 1908 141 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
14961682 14961682 PRJNA950981_P_NODE_5992_length_400_cov_1.400612_g5816_i0 PRJNA950981 5992 400 1.400612 5.602448 Dicrateria rotunda 2703868 Haptophyta other_Eukaryota 350 1.2100000000000003e-91   NTclustered gi|259419544|emb|FN392559.1| 2703868 g5816 i0 84.971 84.7375 346 50 86 2 55 399 45 389 Imantonia rotunda partial mRNA for ADP-ribosylation factor 3, contig 10068 blastn 33895 350 1 Eukaryota Haptista   Haptophyta   Isochrysidales Isochrysidaceae Dicrateria Dicrateria rotunda

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;