RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJNA950981" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 19 ✖

bioproject 1

  • PRJNA950981 · 19 ✖

analysis 1

  • blastn · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
933888 933888 PRJNA950981_P_NODE_5301_length_422_cov_4.793696_g5125_i0 PRJNA950981 5301 422 4.793696 20.22939712 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 357 7.69e-94   NTclustered gi|470455615|ref|XM_004340928.1| 1257118 g5125 i0 83.042 73.3625592417062 401 60 94 7 2 398 397 1 Acanthamoeba castellanii str. Neff ribosomal protein S23 (S12), putative (ACA1_232480), partial mRNA blastn 30959 357 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
1262427 1262427 PRJNA950981_P_NODE_3621_length_504_cov_17.635731_g3446_i0 PRJNA950981 3621 504 17.635731 88.88408424 Ripella 1217112 Discosea other_Eukaryota 760 0   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g3446 i0 94.059 100.583333333333 505 22 100 6 1 504 1073 576 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 50694 760 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
1262431 1262431 PRJNA950981_P_NODE_9041_length_335_cov_1.942748_g8865_i0 PRJNA950981 9041 335 1.942748 6.5082058 Vannellidae 95227 Discosea other_Eukaryota 307 6.11e-79   NTclustered gi|399764216|gb|JQ271727.1| 1215631 g8865 i0 87.41 73.0955223880597 278 22 81 8 2 274 537 268 Vannella sp. BEN3V 18S ribosomal RNA gene, partial sequence blastn 24487 307 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. BEN3V
2209179 2209179 PRJNA950981_P_NODE_5262_length_424_cov_1.327635_g5086_i0 PRJNA950981 5262 424 1.327635 5.6291724 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 322 2.82e-83   NTclustered gi|470439766|ref|XM_004339180.1| 1257118 g5086 i0 80.787 68.6084905660377 432 65 99 12 1 420 1481 1056 Acanthamoeba castellanii str. Neff Inositol3-phosphate synthase (ACA1_058810), partial mRNA blastn 29090 322 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4762262 4762262 PRJNA950981_P_NODE_264_length_1598_cov_6.692459_g213_i0 PRJNA950981 264 1598 6.692459 106.94549482 Vannella septentrionalis 197531 Discosea other_Eukaryota 250 5.4299999999999995e-61   NTclustered gi|300078499|gb|GU001161.1| 197531 g213 i0 76.164 18.6520650813517 537 92 33 25 144 670 1785 2295 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 29806 250 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
6036971 6036971 PRJNA950981_P_NODE_14045_length_275_cov_1.356436_g13869_i0 PRJNA950981 14045 275 1.356436 3.730199 Heterostelium album 2086695 Evosea other_Eukaryota 344 3.72e-90   NTclustered gi|1160574132|ref|XM_020577244.1| 670386 g13869 i0 89.888 96.2218181818182 267 27 97 0 9 275 951 685 Polysphondylium pallidum PN500 actin (act10), partial mRNA blastn 26461 344 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
8586815 8586815 PRJNA950981_P_NODE_17107_length_252_cov_0.871508_g16931_i0 PRJNA950981 17107 252 0.871508 2.19620016 Cavenderia fasciculata 261658 Evosea other_Eukaryota 58.4 4.91e-4   NTclustered gi|470249668|ref|XM_004367009.1| 261658 g16931 i0 97.059 0.388888888888889 34 1 13 0 206 239 1136 1103 Cavenderia fasciculata uncharacterized protein (DFA_07200), partial mRNA blastn 98 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
8586835 8586835 PRJNA950981_P_NODE_3247_length_532_cov_7.039216_g3073_i0 PRJNA950981 3247 532 7.039216 37.44862912 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 904 0   NTclustered gi|399764260|gb|JQ271771.1| 1105345 g3073 i0 97.373 43.6466165413534 533 10 100 4 1 532 1459 1988 Vexillifera bacillipedes strain 1HZ 18S ribosomal RNA gene, partial sequence blastn 23220 904 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
10191240 10191240 PRJNA950981_P_NODE_22268_length_197_cov_5.806452_g22092_i0 PRJNA950981 22268 197 5.806452 11.43871044 Vannellidae 95227 Discosea other_Eukaryota 359 8.98e-95   NTclustered gi|62865948|gb|AY929923.1| 325072 g22092 i0 99.495 82.6040609137056 198 0 100 1 1 197 297 494 Platyamoeba sp. strain VV/I 18S small subunit ribosomal RNA gene, partial sequence blastn 16273 359 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba sp. strain VV/I
11137497 11137497 PRJNA950981_P_NODE_2949_length_556_cov_24.587992_g2776_i0 PRJNA950981 2949 556 24.587992 136.70923552 Ripella sp. 805 1217113 Discosea other_Eukaryota 852 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g2776 i0 94.756 99.6187050359712 553 20 98 8 10 556 1 550 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 55388 852 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
11466279 11466279 PRJNA950981_P_NODE_15549_length_261_cov_1.271277_g15373_i0 PRJNA950981 15549 261 1.271277 3.31803297 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 211 3.71e-50   NTclustered gi|470236159|ref|XM_004349983.1| 261658 g15373 i0 81.928 326.854406130268 249 45 97 0 13 261 431 183 Cavenderia fasciculata uncharacterized protein (DFA_11090), partial mRNA blastn 85309 211 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
17512014 17512014 PRJNA950981_P_NODE_14494_length_271_cov_1.181818_g14318_i0 PRJNA950981 14494 271 1.181818 3.20272678 Acytostelium subglobosum 361139 Evosea other_Eukaryota 161 3.96e-35   NTclustered gi|831772403|ref|XM_012898140.1| 1410327 g14318 i0 81.068 7.60885608856089 206 35 75 4 28 231 216 13 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 2062 161 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
17512042 17512042 PRJNA950981_P_NODE_2894_length_562_cov_1.914110_g2721_i0 PRJNA950981 2894 562 1.91411 10.7572982 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 289 3.88e-73   NTclustered gi|470456539|ref|XM_004341020.1| 1257118 g2721 i0 79.612 47.6565836298932 412 76 73 8 121 528 483 76 Acanthamoeba castellanii str. Neff polyadenylate-binding protein family protein (ACA1_234620), partial mRNA blastn 26783 289 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20060528 20060528 PRJNA950981_P_NODE_4976_length_435_cov_2.441989_g4800_i0 PRJNA950981 4976 435 2.441989 10.62265215 Ripella decalvata 2047822 Discosea other_Eukaryota 291 8.18e-74   NTclustered gi|1269228420|gb|MF683545.1| 2047822 g4800 i0 80.193 87.8574712643678 414 60 93 15 28 431 1576 1175 Ripella decalvata clone 26.1.57 18S ribosomal RNA gene, partial sequence blastn 38218 291 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
20388784 20388784 PRJNA950981_P_NODE_18416_length_249_cov_0.886364_g18240_i0 PRJNA950981 18416 249 0.886364 2.20704636 Entamoeba 5758 Evosea other_Eukaryota 152 2.1599999999999998e-32   NTclustered gi|416223|dbj|D21259.1|ENHEF2A 5759 g18240 i0 83.537 5.90763052208835 164 25 65 2 87 249 1348 1510 Entamoeba histolytica gene for elongation factor 2, partial cds blastn 1471 152 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
22610814 22610814 PRJNA950981_P_NODE_11658_length_300_cov_2.405286_g11482_i0 PRJNA950981 11658 300 2.405286 7.215858 Acytostelium subglobosum 361139 Evosea other_Eukaryota 300 9.03e-77   NTclustered gi|831769224|ref|XM_012897186.1| 1410327 g11482 i0 85.816 70.4733333333333 282 40 94 0 15 296 690 409 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 21142 300 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
22610819 22610819 PRJNA950981_P_NODE_12718_length_288_cov_1.804651_g12542_i0 PRJNA950981 12718 288 1.804651 5.19739488 Platyamoeba placida 3454475 Discosea other_Eukaryota 416 8.2e-112   NTclustered gi|33946348|gb|AY294153.1| 197527 g12542 i0 92.708 99.2013888888889 288 21 100 0 1 288 841 554 Platyamoeba placida actin mRNA, partial cds blastn 28570 416 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
22940257 22940257 PRJNA950981_P_NODE_3958_length_484_cov_8.231144_g3783_i0 PRJNA950981 3958 484 8.231144 39.83873696 Vannellidae 95227 Discosea other_Eukaryota 741 0   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g3783 i0 94.456 100.229338842975 487 18 100 8 1 484 1203 1683 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 48511 741 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
25160009 25160009 PRJNA950981_P_NODE_3120_length_543_cov_1.480851_g2947_i0 PRJNA950981 3120 543 1.480851 8.04102093 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 457 9.68e-124   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g2947 i0 82.051 54.2136279926335 546 88 99 9 1 541 658 118 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 29438 457 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;