RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA949785" and tax_phylum = "Microsporidia"

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tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA949785 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
933237 933237 PRJNA949785_P_NODE_6861_length_413_cov_2.852941_g6664_i0 PRJNA949785 6861 413 2.852941 11.78264633 Pseudoloma neurophilia 146866 Fungi Fungi 763 0   NTclustered gi|11993647|gb|AF322654.1| 146866 g6664 i0 100 93.3753026634383 413 0 100 0 1 413 887 1299 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 38564 763 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
8586179 8586179 PRJNA949785_P_NODE_2147_length_806_cov_4.856753_g1985_i0 PRJNA949785 2147 806 4.856753 39.14542918 Pleistophora mulleri 249366 Fungi Fungi 747 0   NTclustered gi|134147422|gb|EF119339.1| 249366 g1985 i0 83.84 22.9441687344913 823 90 99 38 1 796 3080 2274 Pleistophora mulleri 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 18493 747 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Pleistophora Pleistophora mulleri
11136825 11136825 PRJNA949785_P_NODE_1929_length_852_cov_12.966624_g1777_i0 PRJNA949785 1929 852 12.966624 110.47563648 Pseudoloma neurophilia 146866 Fungi Fungi 1567 0   NTclustered gi|11993647|gb|AF322654.1| 146866 g1777 i0 99.765 96.7171361502347 852 2 100 0 1 852 862 11 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 82403 1567 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
18784907 18784907 PRJNA949785_P_NODE_14755_length_259_cov_1.467742_g14558_i0 PRJNA949785 14755 259 1.467742 3.80145178 Pseudoloma neurophilia 146866 Fungi Fungi 475 1.1799999999999999e-129   NTclustered gi|11993647|gb|AF322654.1| 146866 g14558 i0 99.614 100.602316602317 259 1 100 0 1 259 1681 1939 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 26056 475 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;