RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA949785" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA949785 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8914726 8914726 PRJNA949785_P_NODE_12827_length_283_cov_1.300000_g12630_i0 PRJNA949785 12827 283 1.3 3.679 root 1 Root_unresolved Root_unresolved 523 4.5999999999999983e-144   NTclustered gi|1045515|gb|U36800.1|MLU36800 11786 g12630 i0 100 10.9787985865724 283 0 100 0 1 283 1785 2067 Murine leukemia virus Mo Ampho Delta recombinant envelope polyprotein (env) mRNA, complete cds blastn 3107 523 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
10190672 10190672 PRJNA949785_P_NODE_11028_length_310_cov_1.185654_g10831_i0 PRJNA949785 11028 310 1.185654 3.6755274 root 1 Root_unresolved Root_unresolved 573 4.999999999999998e-159   NTclustered gi|1431162561|gb|EU075330.2| 11786 g10831 i0 100 97.1548387096774 310 0 100 0 1 310 5464 5155 Mutant Murine leukemia virus clone 4-6w_c7 gag-pro-pol polyprotein gene, complete cds blastn 30118 573 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
21664255 21664255 PRJNA949785_P_NODE_14457_length_263_cov_1.115789_g14260_i0 PRJNA949785 14457 263 1.115789 2.93452507 root 1 Root_unresolved Root_unresolved 470 5.59e-128   NTclustered gi|1045515|gb|U36800.1|MLU36800 11786 g14260 i0 98.859 7.14828897338403 263 3 100 0 1 263 1223 1485 Murine leukemia virus Mo Ampho Delta recombinant envelope polyprotein (env) mRNA, complete cds blastn 1880 470 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;