RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA949785" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA949785 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9861165 9861165 PRJNA949785_P_NODE_13208_length_278_cov_1.502439_g13011_i0 PRJNA949785 13208 278 1.502439 4.17678042 Leptotrichia sp. SK-5 3075818 Bacteria Bacteria 52.8 0.026   NTclustered gi|2899356158|dbj|AP028931.1| 3075818 g13011 i0 94.118 0.122302158273381 34 2 12 0 228 261 1247371 1247404 Leptotrichia sp. SK-5 DNA, complete genome blastn 34 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. SK-5
10190703 10190703 PRJNA949785_P_NODE_14088_length_267_cov_1.958763_g13891_i0 PRJNA949785 14088 267 1.958763 5.22989721 Cetobacterium 180162 Bacteria Bacteria 394 3.52e-105   NTclustered gi|2666488225|gb|CP143319.1| 188913 g13891 i0 93.609 89.752808988764 266 14 99 3 3 267 479027 479290 Cetobacterium somerae strain ceto chromosome, complete genome blastn 23964 394 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
11465751 11465751 PRJNA949785_P_NODE_11569_length_301_cov_1.013158_g11372_i0 PRJNA949785 11569 301 1.013158 3.04960558 Cetobacterium 180162 Bacteria Bacteria 555 1.75e-153   NTclustered gi|2865368125|gb|CP122294.1| 188913 g11372 i0 100 138.724252491694 300 0 99 0 2 301 277593 277294 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 41756 555 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;