RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA949785" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA949785 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3814090 3814090 PRJNA949785_P_NODE_8543_length_361_cov_0.725694_g8346_i0 PRJNA949785 8543 361 0.725694 2.61975534 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 640 5.739999999999999e-179   NTclustered gi|14495562|gb|L21708.2|PFA34K 5821 g8346 i0 98.615 100 361 5 100 0 1 361 908 1268 Plasmodium berghei p23-like protein mRNA, partial cds blastn 36100 645 0.992248062015504 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
12741340 12741340 PRJNA949785_P_NODE_7050_length_407_cov_1.934132_g6853_i0 PRJNA949785 7050 407 1.934132 7.87191724 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.039   NTclustered gi|915128644|ref|XM_013479421.1| 5804 g6853 i0 88.636 0.245700245700246 44 3 11 2 287 329 3256 3214 Eimeria maxima hypothetical protein partial mRNA blastn 100 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
17511291 17511291 PRJNA949785_P_NODE_11134_length_308_cov_1.421277_g10937_i0 PRJNA949785 11134 308 1.421277 4.37753316 Cryptosporidium ubiquitum 857276 SAR_Eukaryotes SAR_Eukaryotes 130 1.29e-25   NTclustered gi|1624735278|ref|XM_029020408.1| 857276 g10937 i0 75.824 1.77597402597403 273 57 87 8 41 308 394 662 Cryptosporidium ubiquitum vacuolar ATP synthase subunit B (cubi_03395), partial mRNA blastn 547 130 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium ubiquitum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;