RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA949785" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA949785 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
933162 933162 PRJNA949785_P_NODE_17001_length_247_cov_0.885057_g16804_i0 PRJNA949785 17001 247 0.885057 2.18609079 uncultured Chlamydiae bacterium 305355 Bacteria Bacteria 91.6 4.73e-14   NTclustered gi|2874254045|emb|OY970369.1| 305355 g16804 i0 89.189 24.1376518218623 74 7 30 1 104 177 2206832 2206760 MAG: uncultured Chlamydiae bacterium isolate MFD06092.bin.1.176 genome assembly, chromosome: 1 blastn 5962 91.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
17511298 17511298 PRJNA949785_P_NODE_12314_length_290_cov_1.147465_g12117_i0 PRJNA949785 12314 290 1.147465 3.3276485 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 291 5.23e-74   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g12117 i0 88.235 105.203448275862 255 15 85 11 44 290 7051644 7051397 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 30509 291 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
22610196 22610196 PRJNA949785_P_NODE_19018_length_241_cov_0.916667_g18821_i0 PRJNA949785 19018 241 0.916667 2.20916747 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 342 1.1499999999999999e-89   NTclustered gi|2874253690|emb|OY969416.1| 412056 g18821 i0 92.531 31.8174273858921 241 14 100 3 1 241 1315762 1315526 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 7668 342 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;