RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA946307" and tax_phylum = "Thermoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA946307 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3477023 3477023 PRJNA946307_P_NODE_145903_length_166_cov_0.871795_g145029_i0 PRJNA946307 145903 166 0.871795 1.4471797 Thermoplasmatales archaeon BRNA1 1054217 Archaea Archaea 52.8 0.014   NTclustered gi|472831278|gb|CP002916.1| 1054217 g145029 i0 100 0.168674698795181 28 0 17 0 42 69 336151 336124 Thermoplasmatales archaeon BRNA1, complete genome blastn 28 52.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales     Thermoplasmatales archaeon BRNA1
4754636 4754636 PRJNA946307_P_NODE_141044_length_167_cov_0.881356_g140170_i0 PRJNA946307 141044 167 0.881356 1.47186452 Methanomassiliicoccaceae archaeon 2052168 Archaea Archaea 174 2.87e-39   NTclustered gi|2621703346|emb|OY760646.1| 2052168 g140170 i0 89.286 19.6107784431138 140 13 83 2 16 154 412016 412154 MAG: Methanomassiliicoccaceae archaeon isolate 2dded12f-1c8b-4e4a-b374-f87b1937d54c genome assembly, chromosome: 1 blastn 3275 174 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae   Methanomassiliicoccaceae archaeon
4756552 4756552 PRJNA946307_P_NODE_94424_length_187_cov_0.760870_g93550_i0 PRJNA946307 94424 187 0.76087 1.4228269 Methanomassiliicoccaceae archaeon DOK 1535962 Archaea Archaea 244 2.4599999999999999e-60   NTclustered gi|1799215713|gb|CP047880.1| 1535962 g93550 i0 92.045 16.5935828877005 176 11 93 3 1 173 1503980 1504155 Methanomassiliicoccaceae archaeon DOK chromosome, complete genome blastn 3103 244 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae   Methanomassiliicoccaceae archaeon DOK

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;