RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA946307" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA946307 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2201228 2201228 PRJNA946307_P_NODE_12442_length_373_cov_4.253086_g11576_i0 PRJNA946307 12442 373 4.253086 15.86401078 uncultured Dethiosulfovibrio sp. 185448 Bacteria Bacteria 195 5.5699999999999995e-45   NTclustered gi|2621705290|emb|OY763420.1| 185448 g11576 i0 77.26 826.772117962466 365 53 96 18 13 370 763699 764040 MAG: uncultured Dethiosulfovibrio sp. isolate 94f88398-021e-4021-9552-bf231e535e7d genome assembly, chromosome: 1 blastn 308386 195 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Dethiosulfovibrio uncultured Dethiosulfovibrio sp.
2202801 2202801 PRJNA946307_P_NODE_56702_length_210_cov_2.795031_g55828_i0 PRJNA946307 56702 210 2.795031 5.8695651 Fretibacterium fastidiosum 651822 Bacteria Bacteria 80.5 8.45e-11   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g55828 i0 96 5.78571428571429 50 1 24 1 114 163 729047 729095 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 1215 80.5 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
9854613 9854613 PRJNA946307_P_NODE_163968_length_161_cov_2.919643_g163094_i0 PRJNA946307 163968 161 2.919643 4.70062523 Fretibacterium fastidiosum 651822 Bacteria Bacteria 233 4.45e-57   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g163094 i0 96.479 2.64596273291925 142 4 88 1 4 145 68566 68706 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 426 233 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
14954750 14954750 PRJNA946307_P_NODE_21092_length_278_cov_5.183406_g20219_i0 PRJNA946307 21092 278 5.183406 14.40986868 Fretibacterium fastidiosum 651822 Bacteria Bacteria 248 3.0399999999999997e-61   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g20219 i0 97.26 462.964028776978 146 4 83 0 124 269 68096 67951 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 128704 248 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
18778628 18778628 PRJNA946307_P_NODE_20455_length_283_cov_2.166667_g19582_i0 PRJNA946307 20455 283 2.166667 6.13166761 Fretibacterium fastidiosum 651822 Bacteria Bacteria 322 1.8e-83   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g19582 i0 86.879 33.2014134275618 282 23 95 5 16 283 69385 69104 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 9396 322 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
18779311 18779311 PRJNA946307_P_NODE_59095_length_209_cov_2.262500_g58221_i0 PRJNA946307 59095 209 2.2625 4.728625 Fretibacterium fastidiosum 651822 Bacteria Bacteria 200 6.18e-47   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g58221 i0 88.957 4.33492822966507 163 16 78 2 45 206 69817 69656 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 906 200 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
21328361 21328361 PRJNA946307_P_NODE_143317_length_166_cov_2.444444_g142443_i0 PRJNA946307 143317 166 2.444444 4.05777704 Fretibacterium fastidiosum 651822 Bacteria Bacteria 169 1.32e-37   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g142443 i0 88.112 87.6144578313253 143 16 86 1 10 152 69969 70110 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 14544 169 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
21328991 21328991 PRJNA946307_P_NODE_22577_length_269_cov_8.013636_g21703_i0 PRJNA946307 22577 269 8.013636 21.55668084 Jonquetella anthropi 428712 Bacteria Bacteria 460 3.45e-125   NTclustered gi|194410714|gb|EU840722.1| 428712 g21703 i0 99.216 102.174721189591 255 2 95 0 1 255 315 61 Jonquetella anthropi strain E3_33 23S ribosomal RNA gene, partial sequence blastn 27485 460 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Jonquetella Jonquetella anthropi
22604807 22604807 PRJNA946307_P_NODE_69578_length_199_cov_3.146667_g68704_i0 PRJNA946307 69578 199 3.146667 6.26186733 Fretibacterium fastidiosum 651822 Bacteria Bacteria 99 2.19e-16   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g68704 i0 87.952 0.834170854271357 83 10 42 0 18 100 1353822 1353740 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 166 99 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;