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contig_metadata

30 rows where analysis = "blastn", bioproject = "PRJNA946307" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 30 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA946307 · 30 ✖

analysis 1

  • blastn · 30 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
925896 925896 PRJNA946307_P_NODE_124041_length_173_cov_2.354839_g123167_i0 PRJNA946307 124041 173 2.354839 4.07387147 Rhabditoides inermis 96661 Nematoda Nematoda 150 5.009999999999999e-32   NTclustered gi|158821917|gb|EU195981.1| 96661 g123167 i0 84.049 91.8439306358381 163 18 92 8 15 173 2663 2821 Rhabditoides inermis strain SB328 28S ribosomal RNA gene, partial sequence blastn 15889 150 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditoides Rhabditoides inermis
1260486 1260486 PRJNA946307_P_NODE_35561_length_221_cov_2.680233_g34687_i0 PRJNA946307 35561 221 2.680233 5.92331493 Metazoa 33208 Nematoda Nematoda 383 6.12e-102   NTclustered gi|158821895|gb|EU195959.1| 479134 g34687 i0 100 60.0950226244344 207 0 94 0 1 207 1569 1363 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 13281 383 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
2201625 2201625 PRJNA946307_P_NODE_147622_length_165_cov_2.250000_g146748_i0 PRJNA946307 147622 165 2.25 3.7125 Parasitorhabditis obtusa 466952 Nematoda Nematoda 263 5.86e-66   NTclustered gi|157787503|gb|EF990724.1| 466952 g146748 i0 98.013 91.6545454545455 151 3 92 0 15 165 873 1023 Parasitorhabditis obtusa 28S large subunit ribosomal RNA gene, partial sequence blastn 15123 263 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Parasitorhabditis Parasitorhabditis obtusa
2535789 2535789 PRJNA946307_P_NODE_146042_length_166_cov_0.871795_g145168_i0 PRJNA946307 146042 166 0.871795 1.4471797 Poikilolaimus 96658 Nematoda Nematoda 165 1.7100000000000002e-36   NTclustered gi|157739841|gb|AF083023.3| 96659 g145168 i0 90.4 72.3132530120482 125 12 75 0 29 153 1731 1607 Poikilolaimus oxycercus strain SB200 18S ribosomal RNA gene, partial sequence blastn 12004 165 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Poikilolaimus Poikilolaimus oxycercus
3477619 3477619 PRJNA946307_P_NODE_22163_length_272_cov_2.883408_g21289_i0 PRJNA946307 22163 272 2.883408 7.84286976 Strongyloides papillosus 174720 Nematoda Nematoda 95.3 4.09e-15   NTclustered gi|687022654|emb|LM525568.1| 174720 g21289 i0 80.992 0.444852941176471 121 22 44 1 151 271 284898 284779 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000010 blastn 121 95.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
3811773 3811773 PRJNA946307_P_NODE_10223_length_420_cov_3.951482_g9372_i0 PRJNA946307 10223 420 3.951482 16.5962244 Diploscapter 55799 Nematoda Nematoda 739 0   NTclustered gi|4099006|gb|U81586.1|DSU81586 55800 g9372 i0 99.509 88.7309523809524 407 0 96 2 2 406 965 559 Diploscapter sp. 18S small subunit ribosomal RNA gene, partial sequence blastn 37267 739 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp.
4755370 4755370 PRJNA946307_P_NODE_26984_length_248_cov_4.075377_g26110_i0 PRJNA946307 26984 248 4.075377 10.10693496 Cephaloboides nidrosiensis 479151 Nematoda Nematoda 246 9.59e-61   NTclustered gi|158821928|gb|EU195992.1| 479151 g26110 i0 99.265 56.0483870967742 136 1 94 0 16 151 1262 1397 Cephaloboides nidrosiensis strain DF5075 28S ribosomal RNA gene, partial sequence blastn 13900 246 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Cephaloboides Cephaloboides nidrosiensis
5088123 5088123 PRJNA946307_P_NODE_116684_length_176_cov_5.015748_g115810_i0 PRJNA946307 116684 176 5.015748 8.82771648 Caenorhabditis 6237 Nematoda Nematoda 106 1.12e-18   NTclustered gi|268553472|ref|XM_002634676.1| 6238 g115810 i0 91.139 9.9375 79 5 44 2 3 80 900 823 Caenorhabditis briggsae Protein CBG24065 (CBG24065), partial mRNA blastn 1749 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
6029024 6029024 PRJNA946307_P_NODE_11925_length_383_cov_3.889222_g11061_i0 PRJNA946307 11925 383 3.889222 14.89572026 rhabditoid sp. PDL15 473152 Nematoda Nematoda 481 3.929999999999999e-131   NTclustered gi|158821921|gb|EU195985.1| 473152 g11061 i0 100 67.1618798955614 260 0 68 0 124 383 37 296 Rhabditoid sp. PDL15 28S ribosomal RNA gene, partial sequence blastn 25723 481 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida     rhabditoid sp. PDL15
6030249 6030249 PRJNA946307_P_NODE_30745_length_235_cov_2.096774_g29871_i0 PRJNA946307 30745 235 2.096774 4.9274189 rhabditoid sp. PDL15 473152 Nematoda Nematoda 412 8.39e-111   NTclustered gi|158821921|gb|EU195985.1| 473152 g29871 i0 100 80.4212765957447 223 0 95 0 1 223 1983 1761 Rhabditoid sp. PDL15 28S ribosomal RNA gene, partial sequence blastn 18899 412 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida     rhabditoid sp. PDL15
6031071 6031071 PRJNA946307_P_NODE_75405_length_197_cov_3.229730_g74531_i0 PRJNA946307 75405 197 3.22973 6.3625681 Caenorhabditis remanei 31234 Nematoda Nematoda 119 1.66e-22   NTclustered gi|258503785|gb|FJ805187.1| 31234 g74531 i0 79.762 9.38071065989848 168 30 84 4 16 180 1544 1378 Caenorhabditis remanei strain PB244 ZAG-1 (zag-1) mRNA, partial cds blastn 1848 119 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
7638139 7638139 PRJNA946307_P_NODE_151726_length_164_cov_2.391304_g150852_i0 PRJNA946307 151726 164 2.391304 3.92173856 Metazoa 33208 Nematoda Nematoda 303 3.42e-78   NTclustered gi|158821895|gb|EU195959.1| 479134 g150852 i0 100 29.5670731707317 164 0 100 0 1 164 1595 1758 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 4849 303 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
8578374 8578374 PRJNA946307_P_NODE_100007_length_184_cov_2.081481_g99133_i0 PRJNA946307 100007 184 2.081481 3.82992504 Tricholeiperia cf. proencai DIHM-2020 2794880 Nematoda Nematoda 228 2.4299999999999996e-55   NTclustered gi|1940123960|gb|MW332631.1| 2794880 g99133 i0 91.071 98.1630434782609 168 15 91 0 15 182 1181 1348 Tricholeiperia cf. proencai DIHM-2020 isolate 844 large subunit ribosomal RNA gene, partial sequence blastn 18062 228 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Molineidae Tricholeiperia Tricholeiperia cf. proencai DIHM-2020
8578894 8578894 PRJNA946307_P_NODE_12827_length_366_cov_4.391167_g11961_i0 PRJNA946307 12827 366 4.391167 16.07167122 Diploscapter sp. JU359 479134 Nematoda Nematoda 470 8.089999999999999e-128   NTclustered gi|158821895|gb|EU195959.1| 479134 g11961 i0 88.981 15.0846994535519 363 24 96 11 1 351 659 301 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 5521 470 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
9856098 9856098 PRJNA946307_P_NODE_89168_length_189_cov_1.507143_g88294_i0 PRJNA946307 89168 189 1.507143 2.84850027 Diploscapter sp. JU359 479134 Nematoda Nematoda 350 5.14e-92   NTclustered gi|158821895|gb|EU195959.1| 479134 g88294 i0 100 66.2116402116402 189 0 100 0 1 189 2053 2241 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 12514 350 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
10188697 10188697 PRJNA946307_P_NODE_133168_length_169_cov_2.616667_g132294_i0 PRJNA946307 133168 169 2.616667 4.42216723 Brevibucca 114849 Nematoda Nematoda 143 8.139999999999998e-30   NTclustered gi|1003466869|gb|KU180677.1| 331531 g132294 i0 85.417 84.3372781065089 144 14 83 7 13 152 1348 1488 Brevibucca saprophaga 28S ribosomal RNA gene, partial sequence blastn 14253 143 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Brevibuccidae Brevibucca Brevibucca saprophaga
11130458 11130458 PRJNA946307_P_NODE_17769_length_305_cov_1.414062_g16898_i0 PRJNA946307 17769 305 1.414062 4.3128891 rhabditoid sp. PDL15 473152 Nematoda Nematoda 532 8.33e-147   NTclustered gi|158821921|gb|EU195985.1| 473152 g16898 i0 99.656 0.954098360655738 291 1 95 0 15 305 345 635 Rhabditoid sp. PDL15 28S ribosomal RNA gene, partial sequence blastn 291 532 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida     rhabditoid sp. PDL15
11130724 11130724 PRJNA946307_P_NODE_31909_length_231_cov_3.703297_g31035_i0 PRJNA946307 31909 231 3.703297 8.55461607 Cephaloboides nidrosiensis 479151 Nematoda Nematoda 311 3.08e-80   NTclustered gi|158821928|gb|EU195992.1| 479151 g31035 i0 92.627 84.5324675324675 217 15 94 1 1 216 255 39 Cephaloboides nidrosiensis strain DF5075 28S ribosomal RNA gene, partial sequence blastn 19527 311 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Cephaloboides Cephaloboides nidrosiensis
12739781 12739781 PRJNA946307_P_NODE_25390_length_255_cov_3.970874_g24516_i0 PRJNA946307 25390 255 3.970874 10.1257287 Metazoa 33208 Nematoda Nematoda 161 3.69e-35   NTclustered gi|158821894|gb|EU195958.1| 473172 g24516 i0 92.793 43.6980392156863 111 8 44 0 1 111 1895 2005 Protorhabditis sp. JB122 28S ribosomal RNA gene, partial sequence blastn 11143 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Protorhabditis Protorhabditis sp. JB122
13679584 13679584 PRJNA946307_P_NODE_121391_length_174_cov_3.384000_g120517_i0 PRJNA946307 121391 174 3.384 5.88816 rhabditoid sp. PDL15 473152 Nematoda Nematoda 285 1.3299999999999998e-72   NTclustered gi|158827549|gb|EU196015.1| 473152 g120517 i0 98.16 93.8965517241379 163 3 94 0 6 168 543 381 Rhabditoid sp. PDL15 18S ribosomal RNA gene, partial sequence blastn 16338 285 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida     rhabditoid sp. PDL15
15287628 15287628 PRJNA946307_P_NODE_10092_length_423_cov_4.010695_g9243_i0 PRJNA946307 10092 423 4.010695 16.96523985 Metazoa 33208 Nematoda Nematoda 496 1.57e-135   NTclustered gi|158821895|gb|EU195959.1| 479134 g9243 i0 98.917 66.1560283687943 277 3 65 0 14 290 1734 2010 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 27984 496 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
16229280 16229280 PRJNA946307_P_NODE_15093_length_332_cov_3.558304_g14223_i0 PRJNA946307 15093 332 3.558304 11.81356928 Plectonchus hunti 345504 Nematoda Nematoda 78.7 5.16e-10   NTclustered gi|76560675|gb|DQ145700.1| 345504 g14223 i0 84.615 10.7831325301205 78 12 23 0 15 92 184 261 Plectonchus hunti 28S ribosomal RNA gene, partial sequence blastn 3580 78.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Plectonchus Plectonchus hunti
16563370 16563370 PRJNA946307_P_NODE_6653_length_550_cov_9.550898_g5873_i0 PRJNA946307 6653 550 9.550898 52.529939 Metazoa 33208 Nematoda Nematoda 979 0   NTclustered gi|1174020828|gb|KY887583.1| 6293 g5873 i0 99.628 97.6890909090909 537 1 98 1 13 549 642 1177 Wuchereria bancrofti isolate AP10 small subunit ribosomal RNA gene, partial sequence blastn 53729 987 0.991894630192503 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
17838219 17838219 PRJNA946307_P_NODE_6654_length_550_cov_8.910180_g5874_i0 PRJNA946307 6654 550 8.91018 49.00599 Metazoa 33208 Nematoda Nematoda 979 0   NTclustered gi|1174020828|gb|KY887583.1| 6293 g5874 i0 99.628 97.6890909090909 537 1 98 1 2 538 1177 642 Wuchereria bancrofti isolate AP10 small subunit ribosomal RNA gene, partial sequence blastn 53729 987 0.991894630192503 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
17838338 17838338 PRJNA946307_P_NODE_82014_length_192_cov_3.748252_g81140_i0 PRJNA946307 82014 192 3.748252 7.19664384 Aphelenchoides 90723 Nematoda Nematoda 289 1.1599999999999998e-73   NTclustered gi|339646162|gb|JN049670.1| 554024 g81140 i0 99.375 82.1041666666667 160 0 83 1 32 190 115 274 Uncultured nematode clone Group15 18S ribosomal RNA gene, partial sequence blastn 15764 289 1 Eukaryota Opisthokonta Metazoa Nematoda         Nematoda environmental sample
20053483 20053483 PRJNA946307_P_NODE_22496_length_270_cov_3.085973_g21622_i0 PRJNA946307 22496 270 3.085973 8.3321271 Pristionchus racemosae 1756234 Nematoda Nematoda 73.1 1.9e-8   NTclustered gi|953064353|gb|KT188888.1| 1756234 g21622 i0 92.308 6.16296296296296 52 2 19 2 105 155 1924 1974 Pristionchus racemosae 28S ribosomal RNA gene, partial sequence blastn 1664 73.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus racemosae
22938553 22938553 PRJNA946307_P_NODE_6658_length_550_cov_5.139721_g5878_i0 PRJNA946307 6658 550 5.139721 28.2684655 Diploscapter 55799 Nematoda Nematoda 843 0   NTclustered gi|8515048|gb|AF083009.1| 96671 g5878 i0 95.709 77.7836363636364 536 1 97 1 1 536 533 20 Diploscapter sp. PS1897 18S ribosomal RNA gene, partial sequence blastn 42781 843 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. PS1897
23879558 23879558 PRJNA946307_P_NODE_26479_length_250_cov_9.248756_g25605_i0 PRJNA946307 26479 250 9.248756 23.12189 rhabditoid sp. PDL15 473152 Nematoda Nematoda 431 2.489999999999999e-116   NTclustered gi|158827549|gb|EU196015.1| 473152 g25605 i0 99.576 86.308 236 1 94 0 4 239 839 604 Rhabditoid sp. PDL15 18S ribosomal RNA gene, partial sequence blastn 21577 431 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida     rhabditoid sp. PDL15
23880756 23880756 PRJNA946307_P_NODE_96739_length_185_cov_5.316176_g95865_i0 PRJNA946307 96739 185 5.316176 9.8349256 rhabditoid sp. PDL15 473152 Nematoda Nematoda 315 1.8199999999999998e-81   NTclustered gi|158827549|gb|EU196015.1| 473152 g95865 i0 99.425 93.9621621621622 174 0 94 1 2 175 366 194 Rhabditoid sp. PDL15 18S ribosomal RNA gene, partial sequence blastn 17383 315 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida     rhabditoid sp. PDL15
25486379 25486379 PRJNA946307_P_NODE_108860_length_180_cov_1.984733_g107986_i0 PRJNA946307 108860 180 1.984733 3.5725194 Panagrolaimus 55784 Nematoda Nematoda 222 1.0999999999999999e-53   NTclustered gi|166014126|gb|EU253569.1| 55785 g107986 i0 91.071 15.5444444444444 168 9 92 4 15 179 1584 1748 Panagrolaimus sp. PS1159 28S large subunit ribosomal RNA gene, partial sequence blastn 2798 222 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. PS1159

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;