RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA946307" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA946307 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2535709 2535709 PRJNA946307_P_NODE_134582_length_169_cov_1.533333_g133708_i0 PRJNA946307 134582 169 1.533333 2.59133277 Mesomycoplasma 2923352 Bacteria Bacteria 130 6.34e-26   NTclustered gi|470474476|ref|NR_076218.1| 2118 g133708 i0 82.051 50.414201183432 156 24 91 4 5 158 2869 2716 Mycoplasma mobile strain 163K 23S ribosomal RNA gene, complete sequence blastn 8520 130 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma [Mycoplasma] mobile
6364116 6364116 PRJNA946307_P_NODE_144605_length_166_cov_1.461538_g143731_i0 PRJNA946307 144605 166 1.461538 2.42615308 Mycoplasma 2093 Bacteria Bacteria 56.5 0.001   NTclustered gi|1851159111|gb|CP054256.1| 2102 g143731 i0 100 1.98795180722892 30 0 18 0 29 58 1116283 1116312 Mycoplasma mycoides strain T1/44 GP chromosome, complete genome blastn 330 56.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides
11464218 11464218 PRJNA946307_P_NODE_28009_length_244_cov_3.902564_g27135_i0 PRJNA946307 28009 244 3.902564 9.52225616 Acholeplasma 2147 Bacteria Bacteria 165 2.71e-36   NTclustered gi|549142279|emb|FO681348.1| 61635 g27135 i0 87.075 221.200819672131 147 17 59 1 1 145 257333 257187 complete chromosome Acholeplasma brassicae blastn 53973 165 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma brassicae
13679898 13679898 PRJNA946307_P_NODE_139271_length_167_cov_2.423729_g138397_i0 PRJNA946307 139271 167 2.423729 4.04762743 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 80.5 6.43e-11   NTclustered gi|2621784701|emb|OY781159.1| 1898209 g138397 i0 95.918 3.15568862275449 49 2 29 0 44 92 267538 267490 MAG: Acholeplasmataceae bacterium isolate b77914f2-8fec-49c8-ab37-f01becaaac15 genome assembly, chromosome: 1 blastn 527 80.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
17504240 17504240 PRJNA946307_P_NODE_128074_length_171_cov_3.827869_g127200_i0 PRJNA946307 128074 171 3.827869 6.54565599 Mycoplasmopsis bovirhinis 29553 Bacteria Bacteria 56.5 0.001   NTclustered gi|1269270586|gb|CP024049.1| 29553 g127200 i0 96.97 0.192982456140351 33 1 19 0 31 63 222305 222337 Mycoplasmopsis bovirhinis strain GS01 chromosome, complete genome blastn 33 56.5 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovirhinis
17505206 17505206 PRJNA946307_P_NODE_25594_length_254_cov_5.390244_g24720_i0 PRJNA946307 25594 254 5.390244 13.69121976 uncultured Anaeroplasmataceae bacterium 658266 Bacteria Bacteria 416 7.1e-112   NTclustered gi|254211954|gb|GQ358430.1| 658266 g24720 i0 97.917 92.1023622047244 240 5 94 0 15 254 621 860 Uncultured Anaeroplasmataceae bacterium clone SHTP408 16S ribosomal RNA gene, partial sequence blastn 23394 416 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Anaeroplasmatales Anaeroplasmataceae   uncultured Anaeroplasmataceae bacterium
18780004 18780004 PRJNA946307_P_NODE_9775_length_432_cov_3.684073_g8929_i0 PRJNA946307 9775 432 3.684073 15.91519536 Phytoplasma sp. RYL-GD 463646 Bacteria Bacteria 385 3.62e-102   NTclustered gi|156523962|gb|EU093079.1| 463646 g8929 i0 95.122 56.900462962963 246 9 56 3 187 429 39 284 Phytoplasma sp. RYL-GD 16S ribosomal RNA gene, partial sequence blastn 24581 385 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Phytoplasma sp. RYL-GD
25487185 25487185 PRJNA946307_P_NODE_42980_length_211_cov_3.907407_g42106_i0 PRJNA946307 42980 211 3.907407 8.24462877 Candidatus Phytoplasma 33926 Bacteria Bacteria 222 1.33e-53   NTclustered gi|171853496|emb|AM422018.1| 59748 g42106 i0 85.572 150.54028436019 201 21 92 5 4 197 679854 680053 Candidatus Phytoplasma australiense complete genome blastn 31764 222 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australiense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;