RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA946307" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA946307 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3477133 3477133 PRJNA946307_P_NODE_15263_length_330_cov_2.345196_g14393_i0 PRJNA946307 15263 330 2.345196 7.7391468 Victivallales bacterium CCUG 44730 2094242 Bacteria Bacteria 87.9 8.52e-13   NTclustered gi|1359122976|gb|CP027227.1| 2094242 g14393 i0 94.643 0.16969696969697 56 3 17 0 1 56 344377 344432 Victivallales bacterium CCUG 44730 chromosome, complete genome blastn 56 87.9 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium CCUG 44730
6030485 6030485 PRJNA946307_P_NODE_42225_length_211_cov_5.580247_g41351_i0 PRJNA946307 42225 211 5.580247 11.77432117 Victivallales bacterium CCUG 44730 2094242 Bacteria Bacteria 52.8 0.019   NTclustered gi|1359122976|gb|CP027227.1| 2094242 g41351 i0 100 0.132701421800948 28 0 13 0 111 138 5035615 5035588 Victivallales bacterium CCUG 44730 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium CCUG 44730
21327895 21327895 PRJNA946307_P_NODE_115197_length_177_cov_2.234375_g114323_i0 PRJNA946307 115197 177 2.234375 3.95484375 Victivallales bacterium CCUG 44730 2094242 Bacteria Bacteria 86.1 1.47e-12   NTclustered gi|1359122976|gb|CP027227.1| 2094242 g114323 i0 91.935 1.81920903954802 62 4 34 1 65 125 1289879 1289818 Victivallales bacterium CCUG 44730 chromosome, complete genome blastn 322 86.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium CCUG 44730
21662130 21662130 PRJNA946307_P_NODE_114677_length_177_cov_3.460938_g113803_i0 PRJNA946307 114677 177 3.460938 6.12586026 Bacteria 2 Bacteria Bacteria 176 8.5e-40   NTclustered gi|1995790976|gb|CP071032.1| 1932692 g113803 i0 88.514 64.2146892655367 148 14 82 3 14 159 1585116 1585262 Lentisphaerae bacterium strain zth2 chromosome, complete genome blastn 11366 176 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;