RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA946307" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA946307 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4755530 4755530 PRJNA946307_P_NODE_35344_length_221_cov_6.232558_g34470_i0 PRJNA946307 35344 221 6.232558 13.77395318 uncultured Chytridiomycota 175247 Fungi Fungi 318 1.75e-82   NTclustered gi|291501090|gb|GU598471.1| 175247 g34470 i0 95.074 91.9411764705882 203 9 92 1 6 208 256 55 Uncultured Chytridiomycota clone OFC3P2B3 18S ribosomal RNA gene, partial sequence blastn 20319 318 1 Eukaryota Opisthokonta Fungi Chytridiomycota         uncultured Chytridiomycota
14014295 14014295 PRJNA946307_P_NODE_22031_length_273_cov_2.093750_g21157_i0 PRJNA946307 22031 273 2.09375 5.7159375 Neocallimastigaceae 29007 Fungi Fungi 87.9 6.87e-13   NTclustered gi|82398579|gb|DQ273829.1| 324620 g21157 i0 74.672 24.3369963369963 229 43 82 15 50 272 1833 2052 Cyllamyces aberensis isolate AFTOL-ID 846 28S ribosomal RNA gene, partial sequence blastn 6644 87.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Cyllamyces Cyllamyces aberensis
20052198 20052198 PRJNA946307_P_NODE_106136_length_181_cov_2.787879_g105262_i0 PRJNA946307 106136 181 2.787879 5.04606099 Spizellomyces punctatus 109760 Fungi Fungi 52.8 0.015   NTclustered gi|1026991975|ref|XM_016753480.1| 645134 g105262 i0 100 0.154696132596685 28 0 15 0 15 42 167 140 Spizellomyces punctatus DAOM BR117 ribosomal protein L29 (SPPG_05257), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
21329668 21329668 PRJNA946307_P_NODE_59977_length_207_cov_2.594937_g59103_i0 PRJNA946307 59977 207 2.594937 5.37151959 Polychytrium aggregatum 110093 Fungi Fungi 52.8 0.018   NTclustered gi|2432168288|ref|XM_053112357.1| 110093 g59103 i0 100 0.135265700483092 28 0 14 0 161 188 1102 1075 Polychytrium aggregatum WD40-repeat-containing domain protein (BJ171DRAFT_519533), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
25154059 25154059 PRJNA946307_P_NODE_79640_length_194_cov_3.200000_g78766_i0 PRJNA946307 79640 194 3.2 6.208 [Zygorhizidium] affluens 2268987 Fungi Fungi 62.1 2.78e-5   NTclustered gi|1428079768|gb|MH626496.1| 2268987 g78766 i0 92.857 16.2886597938144 42 3 22 0 48 89 3999 3958 [Zygorhizidium] affluens strain CCAP 4086/1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3160 62.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales Lobulomycetaceae   [Zygorhizidium] affluens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;