RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA946307" and tax_phylum = "Candidatus Latescibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Latescibacterota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA946307 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6029727 6029727 PRJNA946307_P_NODE_158805_length_163_cov_0.894737_g157931_i0 PRJNA946307 158805 163 0.894737 1.45842131 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 159 7.779999999999998e-35   NTclustered gi|2891482399|emb|OZ220089.1| 2053570 g157931 i0 87.143 6.12269938650307 140 18 86 0 16 155 3571732 3571871 MAG: Candidatus Latescibacterota bacterium isolate 4e2a754f-172e-45f6-b93c-83e01e84db49 genome assembly, chromosome: 1 blastn 998 159 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
22604449 22604449 PRJNA946307_P_NODE_48238_length_210_cov_3.900621_g47364_i0 PRJNA946307 48238 210 3.900621 8.1913041 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 71.3 5.09e-8   NTclustered gi|2874254090|emb|OY970173.1| 2053570 g47364 i0 80.645 2.49047619047619 93 17 44 1 111 203 3108817 3108908 MAG: Candidatus Latescibacteria bacterium isolate MFD02242.bin.1.32 genome assembly, chromosome: 1 blastn 523 71.3 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
25153216 25153216 PRJNA946307_P_NODE_32720_length_229_cov_1.372222_g31846_i0 PRJNA946307 32720 229 1.372222 3.14238838 uncultured Latescibacterota bacterium 199737 Bacteria Bacteria 80.5 9.37e-11   NTclustered gi|82523633|emb|AJ937675.1| 199737 g31846 i0 87.324 228.262008733624 71 8 31 1 14 83 2178 2248 Uncultured candidate division WS3 bacterium 16S rRNA gene (partial), ITS1, tRNA-Ile gene, tRNA-Ala gene and 23S rRNA gene (partial), clone b1bcf1.1.f04.rrna.clone7 blastn 52272 80.5 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         uncultured Latescibacterota bacterium
25153879 25153879 PRJNA946307_P_NODE_70260_length_199_cov_3.120000_g69386_i0 PRJNA946307 70260 199 3.12 6.2088 uncultured Latescibacterota bacterium 199737 Bacteria Bacteria 73.1 1.33e-8   NTclustered gi|2518556444|emb|OX638377.1| 199737 g69386 i0 86.567 1.31658291457286 67 7 33 2 128 193 4356423 4356358 MAG: uncultured Latescibacteria bacterium isolate 96736c8f-e424-4c7a-a7cc-5c0d8e7e2df7 genome assembly, chromosome: 1 blastn 262 73.1 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         uncultured Latescibacterota bacterium
25486800 25486800 PRJNA946307_P_NODE_162240_length_162_cov_0.902655_g161366_i0 PRJNA946307 162240 162 0.902655 1.4623011 Bacteria 2 Bacteria Bacteria 110 7.89e-20   NTclustered gi|2518556444|emb|OX638377.1| 199737 g161366 i0 85.577 13.6049382716049 104 15 64 0 1 104 3744341 3744238 MAG: uncultured Latescibacteria bacterium isolate 96736c8f-e424-4c7a-a7cc-5c0d8e7e2df7 genome assembly, chromosome: 1 blastn 2204 110 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         uncultured Latescibacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;