RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

32 rows where analysis = "blastn", bioproject = "PRJNA944406" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 32 ✖

bioproject 1

  • PRJNA944406 · 32 ✖

analysis 1

  • blastn · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
924488 924488 PRJNA944406_P_NODE_39321_length_273_cov_1.530000_g38362_i0 PRJNA944406 39321 273 1.53 4.1769 Haloarcula litorea 3032579 Archaea Archaea 52.8 0.025   NTclustered gi|2463595526|gb|CP119779.1| 3032579 g38362 i0 100 0.102564102564103 28 0 10 0 188 215 847737 847710 Haloarcula litorea strain GDY20 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula litorea
924936 924936 PRJNA944406_P_NODE_7961_length_444_cov_1.628032_g7004_i0 PRJNA944406 7961 444 1.628032 7.22846208 uncultured crenarchaeote 29281 Archaea Archaea 673 0   NTclustered gi|22797874|emb|AJ496176.1| 29281 g7004 i0 94.144 48.0833333333333 444 22 100 3 1 444 5937 6376 Uncultured crenarchaeote 34 kb genomic fragment blastn 21349 673 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
1259275 1259275 PRJNA944406_P_NODE_1041_length_1323_cov_19.168000_g613_i1 PRJNA944406 1041 1323 19.168 253.59264 root 1 Root_unresolved Root_unresolved 2261 0   NTclustered gi|152014600|gb|EF690623.1| 29281 g613 i1 97.508 103.417233560091 1324 31 100 2 1 1323 1333 11 Uncultured crenarchaeote clone TX4CA_68 16S ribosomal RNA gene, partial sequence blastn 136821 2283 0.990363556723609 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
1259421 1259421 PRJNA944406_P_NODE_34121_length_278_cov_1.434146_g33162_i0 PRJNA944406 34121 278 1.434146 3.98692588 Halobacterium 2239 Archaea Archaea 95.3 4.19e-15   NTclustered gi|966204314|emb|LN831302.1| 1407499 g33162 i0 93.651 6.51798561151079 63 4 23 0 190 252 896973 897035 Halobacterium hubeiense strain JI20-1 genome assembly, chromosome: I blastn 1812 95.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium hubeiense
1259546 1259546 PRJNA944406_P_NODE_76141_length_248_cov_1.577143_g75182_i0 PRJNA944406 76141 248 1.577143 3.91131464 Methanobrevibacter 2172 Archaea Archaea 416 6.9e-112   NTclustered gi|1294447101|gb|CP017803.1| 2173 g75182 i0 97.177 138.237903225806 248 4 100 1 1 248 265311 265067 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 34283 416 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
2534985 2534985 PRJNA944406_P_NODE_1022_length_1333_cov_20.376190_g613_i0 PRJNA944406 1022 1333 20.37619 271.6146127 Archaea 2157 Archaea Archaea 2261 0   NTclustered gi|1497996|gb|U62819.1|UAU62819 50857 g613 i0 97.436 103.756939234809 1326 34 99 0 1 1326 1326 1 Unidentified archaeon SCA1175 16S small subunit ribosomal RNA gene, partial sequence blastn 138308 2266 0.997793468667255 Archaea   Thermoproteati Thermoproteota         unidentified archaeon SCA1175
2535167 2535167 PRJNA944406_P_NODE_502_length_1713_cov_3.157317_g270_i0 PRJNA944406 502 1713 3.157317 54.08484021 Candidatus Nitrosocosmicus 1826864 Archaea Archaea 2687 0   NTclustered gi|937513727|gb|CP012850.1| 1353260 g270 i0 94.982 72.0484530064215 1714 85 100 1 1 1713 849592 847879 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 123419 2687 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
3475481 3475481 PRJNA944406_P_NODE_59023_length_255_cov_1.175824_g58064_i0 PRJNA944406 59023 255 1.175824 2.9983512 uncultured crenarchaeote 29281 Archaea Archaea 438 1.52e-118   NTclustered gi|42557759|emb|AJ627422.1| 29281 g58064 i0 97.647 115.137254901961 255 6 100 0 1 255 43004 43258 Uncultured crenarchaeote genomic fragment 54d9 blastn 29360 438 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
4753211 4753211 PRJNA944406_P_NODE_64_length_3061_cov_6.079652_g35_i0 PRJNA944406 64 3061 6.079652 186.09814772 uncultured crenarchaeote 29281 Archaea Archaea 3858 0   NTclustered gi|42557759|emb|AJ627422.1| 29281 g35 i0 90.379 96.1127082652728 2952 262 96 20 1 2943 40384 43322 Uncultured crenarchaeote genomic fragment 54d9 blastn 294201 3858 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
6027612 6027612 PRJNA944406_P_NODE_32545_length_279_cov_2.165049_g31586_i0 PRJNA944406 32545 279 2.165049 6.04048671 Halobacterium hubeiense 1407499 Archaea Archaea 52.8 0.026   NTclustered gi|966204314|emb|LN831302.1| 1407499 g31586 i0 100 0.100358422939068 28 0 10 0 11 38 144533 144560 Halobacterium hubeiense strain JI20-1 genome assembly, chromosome: I blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium hubeiense
7302299 7302299 PRJNA944406_P_NODE_14666_length_334_cov_3.026820_g13707_i0 PRJNA944406 14666 334 3.02682 10.1095788 uncultured archaeon 115547 Archaea Archaea 446 1.24e-120   NTclustered gi|388254672|gb|JQ768092.1| 115547 g13707 i0 95.668 19.5269461077844 277 12 83 0 58 334 27202 27478 Uncultured archaeon clone 02j05, complete sequence blastn 6522 446 1 Archaea               uncultured archaeon
8577814 8577814 PRJNA944406_P_NODE_75987_length_248_cov_1.702857_g75028_i0 PRJNA944406 75987 248 1.702857 4.22308536 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 291 4.37e-74   NTclustered gi|937513727|gb|CP012850.1| 1353260 g75028 i0 90.783 0.875 217 20 88 0 28 244 2170817 2171033 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 217 291 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
8912140 8912140 PRJNA944406_P_NODE_112807_length_227_cov_3.974026_g111848_i0 PRJNA944406 112807 227 3.974026 9.02103902 root 1 Root_unresolved Root_unresolved 213 8.76e-51   NTclustered gi|2425346214|gb|OQ220769.1| 115547 g111848 i0 85.116 98.1101321585903 215 25 92 5 1 208 406 192 Uncultured archaeon clone OTU_283 16S ribosomal RNA gene, partial sequence blastn 22271 213 1 Archaea               uncultured archaeon
9852658 9852658 PRJNA944406_P_NODE_50828_length_262_cov_1.629630_g49869_i0 PRJNA944406 50828 262 1.62963 4.2696306 Candidatus Nitrososphaera gargensis 497727 Archaea Archaea 154 6.37e-33   NTclustered gi|408363220|gb|CP002408.1| 1237085 g49869 i0 88.8 5.17557251908397 125 14 48 0 9 133 2729319 2729195 Candidatus Nitrososphaera gargensis Ga9.2, complete genome blastn 1356 154 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Candidatus Nitrososphaera gargensis
11127865 11127865 PRJNA944406_P_NODE_16369_length_319_cov_1.796748_g15410_i0 PRJNA944406 16369 319 1.796748 5.73162612 uncultured crenarchaeote 29281 Archaea Archaea 361 4.38e-95   NTclustered gi|22797874|emb|AJ496176.1| 29281 g15410 i0 87.382 36.6457680250784 317 37 99 3 1 316 7296 7610 Uncultured crenarchaeote 34 kb genomic fragment blastn 11690 361 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
11128054 11128054 PRJNA944406_P_NODE_30349_length_282_cov_0.803828_g29390_i0 PRJNA944406 30349 282 0.803828 2.26679496 Candidatus Nitrosocosmicus hydrocola 1826872 Archaea Archaea 110 1.52e-19   NTclustered gi|1100598057|gb|CP017922.1| 1826872 g29390 i0 89.011 1.9822695035461 91 6 31 4 64 151 995980 996069 Candidatus Nitrosocosmicus hydrocola strain G61, complete genome blastn 559 110 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus hydrocola
11128654 11128654 PRJNA944406_P_NODE_84289_length_246_cov_1.982659_g83330_i0 PRJNA944406 84289 246 1.982659 4.87734114 uncultured archaeon 115547 Archaea Archaea 438 1.4599999999999996e-118   NTclustered gi|765560203|gb|KP308704.1| 115547 g83330 i0 98.78 20.3089430894309 246 3 100 0 1 246 5969 5724 Uncultured archaeon clone RBG_13_scaffold_41842 genomic sequence blastn 4996 438 1 Archaea               uncultured archaeon
12404257 12404257 PRJNA944406_P_NODE_98170_length_243_cov_1.405882_g97211_i0 PRJNA944406 98170 243 1.405882 3.41629326 archaeon 1906665 Archaea Archaea 56.5 0.002   NTclustered gi|2107951395|gb|CP070794.1| 1906665 g97211 i0 97.059 0.139917695473251 34 0 14 1 1 34 302706 302738 MAG: archaeon isolate bin1429 chromosome blastn 34 56.5 1 Archaea               archaeon
17502470 17502470 PRJNA944406_P_NODE_1754_length_1061_cov_2.449393_g1135_i0 PRJNA944406 1754 1061 2.449393 25.98805973 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 1903 0   NTclustered gi|937513727|gb|CP012850.1| 1353260 g1135 i0 99.057 70.4938737040528 1061 9 100 1 1 1061 849685 848626 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 74794 1903 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
17503306 17503306 PRJNA944406_P_NODE_93574_length_244_cov_1.578947_g92615_i0 PRJNA944406 93574 244 1.578947 3.85263068 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 361 3.219999999999999e-95   NTclustered gi|937513727|gb|CP012850.1| 1353260 g92615 i0 93.416 0.995901639344262 243 16 99 0 2 244 1307723 1307965 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 243 361 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
17503343 17503343 PRJNA944406_P_NODE_97934_length_243_cov_1.623529_g96975_i0 PRJNA944406 97934 243 1.623529 3.94517547 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 340 4.169999999999999e-89   NTclustered gi|937513727|gb|CP012850.1| 1353260 g96975 i0 92.469 0.983539094650206 239 17 98 1 1 239 3047598 3047835 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 239 340 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
17836927 17836927 PRJNA944406_P_NODE_5914_length_528_cov_5.819780_g4963_i0 PRJNA944406 5914 528 5.81978 30.7284384 Nitrososphaera 497726 Archaea Archaea 710 0   NTclustered gi|300521484|gb|GU797787.1| 497727 g4963 i0 90.943 83.7897727272727 530 45 100 3 1 528 543 15 Candidatus Nitrososphaera gargensis 23S ribosomal RNA gene, partial sequence blastn 44241 710 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Candidatus Nitrososphaera gargensis
18776519 18776519 PRJNA944406_P_NODE_59295_length_254_cov_1.955801_g58336_i0 PRJNA944406 59295 254 1.955801 4.96773454 Candidatus Nitrosocosmicus arcticus 2035267 Archaea Archaea 302 2.0700000000000006e-77   NTclustered gi|1241355791|gb|KX863713.1| 2035267 g58336 i0 88.189 22.0866141732283 254 29 100 1 1 254 1679 1427 Candidatus Nitrosocosmicus arcticus 23S ribosomal RNA gene, partial sequence blastn 5610 302 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus arcticus
18776921 18776921 PRJNA944406_P_NODE_97875_length_243_cov_1.676471_g96916_i0 PRJNA944406 97875 243 1.676471 4.0738245300000004 Methanobacterium lacus 877455 Archaea Archaea 337 5.399999999999998e-88   NTclustered gi|325329191|gb|CP002551.1| 877455 g96916 i0 94.118 5.46090534979424 221 13 91 0 1 221 580339 580559 Methanobacterium lacus strain AL-21, complete genome blastn 1327 337 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium lacus
22601202 22601202 PRJNA944406_P_NODE_10818_length_379_cov_2.101307_g9859_i0 PRJNA944406 10818 379 2.101307 7.96395353 uncultured archaeon 115547 Archaea Archaea 453 8.470000000000001e-123   NTclustered gi|51092430|gb|AY650015.1| 115547 g9859 i0 100 64.9788918205805 245 0 65 0 135 379 2 246 Uncultured archaeon clone Nap018 16S ribosomal RNA gene, partial sequence blastn 24627 453 1 Archaea               uncultured archaeon
22601351 22601351 PRJNA944406_P_NODE_19618_length_297_cov_2.607143_g18659_i0 PRJNA944406 19618 297 2.607143 7.74321471 Methanogenium organophilum 2199 Archaea Archaea 303 6.9000000000000015e-78   NTclustered gi|2388587735|gb|CP113361.1| 2199 g18659 i0 92.093 0.723905723905724 215 17 72 0 3 217 2242403 2242189 Methanogenium organophilum strain DSM 3596 chromosome, complete genome blastn 215 303 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanogenium Methanogenium organophilum
22601575 22601575 PRJNA944406_P_NODE_40378_length_272_cov_1.547739_g39419_i0 PRJNA944406 40378 272 1.547739 4.20985008 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 309 1.3400000000000002e-79   NTclustered gi|937513727|gb|CP012850.1| 1353260 g39419 i0 87.132 1 272 35 100 0 1 272 3054486 3054215 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 272 309 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
22601640 22601640 PRJNA944406_P_NODE_45478_length_267_cov_1.587629_g44519_i0 PRJNA944406 45478 267 1.587629 4.23896943 Haloferax mediterranei 2252 Archaea Archaea 52.8 0.024   NTclustered gi|640913992|gb|CP001868.2| 523841 g44519 i0 96.774 0.337078651685393 31 1 12 0 94 124 2373736 2373766 Haloferax mediterranei ATCC 33500, complete genome blastn 90 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax mediterranei
22602123 22602123 PRJNA944406_P_NODE_8858_length_418_cov_2.939130_g7900_i0 PRJNA944406 8858 418 2.93913 12.2855634 uncultured archaeon 115547 Archaea Archaea 726 0   NTclustered gi|765560203|gb|KP308704.1| 115547 g7900 i0 98.082 41.7129186602871 417 8 99 0 2 418 4787 5203 Uncultured archaeon clone RBG_13_scaffold_41842 genomic sequence blastn 17436 726 1 Archaea               uncultured archaeon
24210940 24210940 PRJNA944406_P_NODE_1599_length_1105_cov_4.120155_g1019_i0 PRJNA944406 1599 1105 4.120155 45.52771275 Nitrososphaera 497726 Archaea Archaea 1415 0   NTclustered gi|388254672|gb|JQ768092.1| 115547 g1019 i0 89.883 54.2642533936652 1107 102 99 8 1 1104 30139 29040 Uncultured archaeon clone 02j05, complete sequence blastn 59962 1415 1 Archaea               uncultured archaeon
25151052 25151052 PRJNA944406_P_NODE_69100_length_250_cov_0.870056_g68141_i0 PRJNA944406 69100 250 0.870056 2.17514 uncultured crenarchaeote 29281 Archaea Archaea 99 2.87e-16   NTclustered gi|22797874|emb|AJ496176.1| 29281 g68141 i0 91.549 1.568 71 6 28 0 1 71 5915 5845 Uncultured crenarchaeote 34 kb genomic fragment blastn 392 99 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
25151104 25151104 PRJNA944406_P_NODE_74220_length_249_cov_0.875000_g73261_i0 PRJNA944406 74220 249 0.875 2.17875 Candidatus Mancarchaeum acidiphilum 1920749 Archaea Archaea 84.2 7.99e-12   NTclustered gi|1214173074|gb|CP019964.1| 1920749 g73261 i0 89.552 2.95983935742972 67 5 27 2 12 77 842896 842961 Candidatus Mancarchaeum acidiphilum strain Mia14 chromosome, complete genome blastn 737 84.2 1 Archaea   Nanobdellati Candidatus Micrarchaeota       Candidatus Mancarchaeum Candidatus Mancarchaeum acidiphilum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;