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contig_metadata

21 rows where analysis = "blastn", bioproject = "PRJNA944406" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 21 ✖

tax_clade 1

bioproject 1

  • PRJNA944406 · 21 ✖

analysis 1

  • blastn · 21 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
924808 924808 PRJNA944406_P_NODE_6641_length_492_cov_7.940334_g5685_i0 PRJNA944406 6641 492 7.940334 39.06644328 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 821 0   NTclustered gi|33520250|gb|AY273995.1| 92964 g5685 i0 96.939 96.9959349593496 490 14 99 1 3 492 509 21 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 47722 821 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
2199533 2199533 PRJNA944406_P_NODE_112402_length_230_cov_2.382166_g111443_i0 PRJNA944406 112402 230 2.382166 5.4789818 Phytophthora pinifolia 538568 SAR_Eukaryotes SAR_Eukaryotes 198 2.49e-46   NTclustered gi|1434829014|gb|MH493999.1| 538568 g111443 i0 82.533 51.5913043478261 229 36 99 4 4 230 370 144 Phytophthora pinifolia strain ex-type CPHST BL 49 beta-tubulin gene, partial cds blastn 11866 198 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora pinifolia
2199943 2199943 PRJNA944406_P_NODE_44922_length_268_cov_1.333333_g43963_i0 PRJNA944406 44922 268 1.333333 3.57333244 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 468 2.06e-127   NTclustered gi|325194231|emb|FR825088.1| 890382 g43963 i0 98.134 1.51492537313433 268 5 100 0 1 268 1104 837 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 406 468 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
7302238 7302238 PRJNA944406_P_NODE_111726_length_233_cov_9.162500_g110767_i0 PRJNA944406 111726 233 9.1625 21.348625 Peronospora arvensis 162115 SAR_Eukaryotes SAR_Eukaryotes 431 2.2899999999999996e-116   NTclustered gi|33520212|gb|AY273957.1| 162115 g110767 i0 100 100.064377682403 233 0 100 0 1 233 742 510 Peronospora arvensis large subunit ribosomal RNA gene, partial sequence blastn 23315 431 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora arvensis
8577790 8577790 PRJNA944406_P_NODE_73827_length_249_cov_0.875000_g72868_i0 PRJNA944406 73827 249 0.875 2.17875 Phytophthora agathidicida 1642459 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|2046503726|tpg|BK014403.1| 1642459 g72868 i0 100 1.79919678714859 28 0 11 0 156 183 5679 5652 TPA_asm: Phytophthora agathidicida mitochondrion, complete genome blastn 448 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora agathidicida
8912136 8912136 PRJNA944406_P_NODE_112447_length_229_cov_3.634615_g111488_i0 PRJNA944406 112447 229 3.634615 8.32326835 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 315 2.36e-81   NTclustered gi|2440150|emb|X75631.1| 4788 g111488 i0 91.379 85.2445414847162 232 17 100 2 1 229 3623 3392 P.megasperma gene for 28S ribosomal RNA blastn 19521 315 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
8912148 8912148 PRJNA944406_P_NODE_12227_length_360_cov_7.222997_g11268_i0 PRJNA944406 12227 360 7.222997 26.0027892 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 582 9.779999999999996e-162   NTclustered gi|2440150|emb|X75631.1| 4788 g11268 i0 95.856 99.7138888888889 362 12 100 3 1 360 3065 2705 P.megasperma gene for 28S ribosomal RNA blastn 35897 582 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
8912165 8912165 PRJNA944406_P_NODE_16087_length_321_cov_3.342742_g15128_i0 PRJNA944406 16087 321 3.342742 10.73020182 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 488 1.9399999999999996e-133   NTclustered gi|58202010|gb|AY898628.1| 4787 g15128 i0 94.099 100.171339563863 322 18 100 1 1 321 8242 8563 Phytophthora infestans haplotype IIb mitochondrion, complete genome blastn 32155 488 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
10188253 10188253 PRJNA944406_P_NODE_6948_length_480_cov_1.250614_g5992_i0 PRJNA944406 6948 480 1.250614 6.0029472 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 832 0   NTclustered gi|2314988938|ref|NC_067073.1| 89334 g5992 i0 97.917 100.995833333333 480 10 100 0 1 480 32251 32730 Phytophthora clandestina voucher P3942 mitochondrion, complete genome blastn 48478 837 0.994026284348865 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora clandestina
11128642 11128642 PRJNA944406_P_NODE_83029_length_247_cov_0.885057_g82070_i0 PRJNA944406 83029 247 0.885057 2.18609079 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 187 5.87e-43   NTclustered gi|325194852|emb|FR825649.1| 890382 g82070 i0 91.791 1.34817813765182 134 11 54 0 114 247 680 547 Albugo laibachii Nc14, genomic contig CONTIG_2615_NC14_v4_682_163 blastn 333 187 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
12404206 12404206 PRJNA944406_P_NODE_93490_length_244_cov_1.649123_g92531_i0 PRJNA944406 93490 244 1.649123 4.02386012 Plectospira myriandra 100863 SAR_Eukaryotes SAR_Eukaryotes 141 4.57e-29   NTclustered gi|34329028|gb|AY292379.1| 100863 g92531 i0 81.765 32.9836065573771 170 29 69 2 31 199 590 422 Plectospira myriandra glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, partial cds blastn 8048 141 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Plectospira Plectospira myriandra
12738960 12738960 PRJNA944406_P_NODE_78870_length_248_cov_0.880000_g77911_i0 PRJNA944406 78870 248 0.88 2.1824 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 71.3 6.19e-8   NTclustered gi|698818146|ref|XM_009843800.1| 112090 g77911 i0 95.455 0.354838709677419 44 2 18 0 3 46 270 313 Aphanomyces astaci 40S ribosomal protein S27-like protein mRNA blastn 88 71.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
15287242 15287242 PRJNA944406_P_NODE_111192_length_236_cov_2.822086_g110233_i0 PRJNA944406 111192 236 2.822086 6.66012296 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 436 4.999999999999999e-118   NTclustered gi|1663822467|gb|MH730839.1| 120572 g110233 i0 100 99.978813559322 236 0 100 0 1 236 1031 796 Peronospora bulbocapni voucher GLM64102 28S ribosomal RNA gene, partial sequence blastn 23595 436 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora bulbocapni
18776051 18776051 PRJNA944406_P_NODE_20115_length_294_cov_3.529412_g19156_i0 PRJNA944406 20115 294 3.529412 10.37647128 Peronospora effusa 542832 SAR_Eukaryotes SAR_Eukaryotes 455 1.7800000000000002e-123   NTclustered gi|1534885766|gb|MH142315.1| 542832 g19156 i0 94.576 99.2040816326531 295 15 100 1 1 294 5403 5697 Peronospora effusa isolate R13 mitochondrion, complete genome blastn 29166 455 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora effusa
20385600 20385600 PRJNA944406_P_NODE_10856_length_378_cov_29.868852_g9897_i0 PRJNA944406 10856 378 29.868852 112.90426056 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 678 0   NTclustered gi|189084716|gb|BT032234.1| 4784 g9897 i0 99.204 99.7089947089947 377 2 99 1 3 378 1 377 Phytophthora capsici clone CBOT157-J12 mRNA sequence blastn 37690 682 0.994134897360704 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
20385765 20385765 PRJNA944406_P_NODE_5036_length_579_cov_25.575099_g4097_i0 PRJNA944406 5036 579 25.575099 148.07982321 Peronosporales 4776 SAR_Eukaryotes SAR_Eukaryotes 922 0   NTclustered gi|1238675774|gb|MF783088.1| 4784 g4097 i0 95.369 100.692573402418 583 21 100 5 1 579 1133 553 Phytophthora capsici isolate CACAO small subunit ribosomal RNA gene, partial sequence blastn 58301 928 0.993534482758621 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
21326881 21326881 PRJNA944406_P_NODE_59777_length_254_cov_1.497238_g58818_i0 PRJNA944406 59777 254 1.497238 3.80298452 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 137 6.19e-28   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g58818 i0 78.44 88.6614173228347 218 42 85 3 40 254 2247 2462 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 22520 137 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
21661880 21661880 PRJNA944406_P_NODE_9157_length_411_cov_2.414201_g8198_i0 PRJNA944406 9157 411 2.414201 9.92236611 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 699 0   NTclustered gi|2314988899|ref|NC_067072.1| 89335 g8198 i0 97.324 100.226277372263 411 11 100 0 1 411 19367 19777 Phytophthora ilicis voucher P3939 mitochondrion, complete genome blastn 41193 699 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ilicis
22602221 22602221 PRJNA944406_P_NODE_98498_length_243_cov_0.905882_g97539_i0 PRJNA944406 98498 243 0.905882 2.20129326 Elongisporangium undulatum 127444 SAR_Eukaryotes SAR_Eukaryotes 313 9.1e-81   NTclustered gi|33520249|gb|AY273994.1| 127444 g97539 i0 89.796 101.251028806584 245 23 100 2 1 243 697 453 Pythium undulatum large subunit ribosomal RNA gene, partial sequence blastn 24604 313 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Elongisporangium Elongisporangium undulatum
22937231 22937231 PRJNA944406_P_NODE_56958_length_256_cov_5.978142_g55999_i0 PRJNA944406 56958 256 5.978142 15.30404352 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 350 7.37e-92   NTclustered gi|90655139|gb|DQ361260.1| 4792 g55999 i0 91.473 100.8046875 258 16 100 5 1 256 487 740 Phytophthora nicotianae large subunit ribosomal RNA gene, partial sequence blastn 25806 351 0.997150997150997 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
22937234 22937234 PRJNA944406_P_NODE_5738_length_536_cov_13.943844_g4789_i0 PRJNA944406 5738 536 13.943844 74.73900384 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 946 0   NTclustered gi|33520246|gb|AY273991.1| 4787 g4789 i0 98.689 99.6305970149254 534 6 99 1 3 536 540 8 Phytophthora infestans large subunit ribosomal RNA gene, partial sequence blastn 53402 953 0.992654774396642 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;