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contig_metadata

26 rows where analysis = "blastn", bioproject = "PRJNA944406" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 26 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA944406 · 26 ✖

analysis 1

  • blastn · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
924200 924200 PRJNA944406_P_NODE_13261_length_349_cov_1.083333_g12302_i0 PRJNA944406 13261 349 1.083333 3.78083217 Caenorhabditis remanei 31234 Nematoda Nematoda 202 3.09e-47   NTclustered gi|2445382071|ref|XM_003114270.2| 31234 g12302 i0 81.673 23.0286532951289 251 38 71 8 2 248 627 381 Caenorhabditis remanei uncharacterized protein (GCK72_018279), partial mRNA blastn 8037 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
1259337 1259337 PRJNA944406_P_NODE_16201_length_320_cov_4.574899_g15242_i0 PRJNA944406 16201 320 4.574899 14.6396768 Plectidae 114910 Nematoda Nematoda 573 5.179999999999999e-159   NTclustered gi|2851457677|gb|PQ587626.1| 49354 g15242 i0 100 96.878125 310 0 97 0 1 310 355 664 Plectus sp. voucher ARO.22.19_GMG903_Plectus_18S small subunit ribosomal RNA gene, partial sequence blastn 31001 573 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae Plectus Plectus sp.
4752604 4752604 PRJNA944406_P_NODE_12844_length_353_cov_2.200000_g11885_i0 PRJNA944406 12844 353 2.2 7.766 Caenorhabditis briggsae 6238 Nematoda Nematoda 104 9.09e-18   NTclustered gi|2158421529|ref|XM_045237414.1| 6238 g11885 i0 92.958 15.7308781869688 71 5 20 0 1 71 341 411 Caenorhabditis briggsae Protein CBG23442 (CBG23442), partial mRNA blastn 5553 104 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
4753233 4753233 PRJNA944406_P_NODE_66824_length_250_cov_2.175141_g65865_i0 PRJNA944406 66824 250 2.175141 5.4378525 Discotylenchus lorestanensis 1908339 Nematoda Nematoda 58.4 4.87e-4   NTclustered gi|1121675849|gb|KU878154.1| 1908339 g65865 i0 97.059 1.808 34 1 14 0 85 118 322 289 Discotylenchus lorestanensis 28S ribosomal RNA gene, partial sequence blastn 452 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylenchidae Discotylenchus Discotylenchus lorestanensis
6027690 6027690 PRJNA944406_P_NODE_39885_length_272_cov_2.718593_g38926_i0 PRJNA944406 39885 272 2.718593 7.39457296 Necator americanus 51031 Nematoda Nematoda 76.8 1.48e-9   NTclustered gi|915242119|ref|XM_013438616.1| 51031 g38926 i0 88.71 0.227941176470588 62 7 23 0 69 130 802 863 Necator americanus uncharacterized protein (RB195_011548), partial mRNA blastn 62 76.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
6028283 6028283 PRJNA944406_P_NODE_92925_length_244_cov_2.502924_g91966_i0 PRJNA944406 92925 244 2.502924 6.10713456 Diploscapter sp. JU359 479134 Nematoda Nematoda 451 1.86e-122   NTclustered gi|158821895|gb|EU195959.1| 479134 g91966 i0 100 93.5327868852459 244 0 100 0 1 244 3107 3350 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 22822 451 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
7302155 7302155 PRJNA944406_P_NODE_102286_length_242_cov_1.615385_g101327_i0 PRJNA944406 102286 242 1.615385 3.9092317 Nematoda environmental sample 554024 Nematoda Nematoda 448 2.3799999999999995e-121   NTclustered gi|57833980|emb|AJ875138.1| 554024 g101327 i0 100 99.9917355371901 242 0 100 0 1 242 67 308 Uncultured nematode partial 18S rRNA gene, clone SType 10 blastn 24198 448 1 Eukaryota Opisthokonta Metazoa Nematoda         Nematoda environmental sample
7302357 7302357 PRJNA944406_P_NODE_20646_length_292_cov_1.844749_g19687_i0 PRJNA944406 20646 292 1.844749 5.38666708 Stegelleta sp. JB-75 345507 Nematoda Nematoda 135 2.61e-27   NTclustered gi|76560679|gb|DQ145704.1| 345507 g19687 i0 76.692 59.3835616438356 266 48 88 13 25 281 102 362 Stegelleta sp. JB-75 28S ribosomal RNA gene, partial sequence blastn 17340 135 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cephalobidae Stegelleta Stegelleta sp. JB-75
8577162 8577162 PRJNA944406_P_NODE_14547_length_335_cov_3.000000_g13588_i0 PRJNA944406 14547 335 3 10.05 Plectus acuminatus 70689 Nematoda Nematoda 315 3.65e-81   NTclustered gi|3860543|emb|AJ012665.1| 70689 g13588 i0 84.524 1.00298507462687 336 33 99 14 5 335 1498 1819 Plectus acuminatus mRNA for actin blastn 336 315 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae Plectus Plectus acuminatus
8912143 8912143 PRJNA944406_P_NODE_11587_length_368_cov_1.552542_g10628_i0 PRJNA944406 11587 368 1.552542 5.71335456 Micoletzkya 669149 Nematoda Nematoda 63.9 1.61e-5   NTclustered gi|410992290|gb|JX163965.1| 1250334 g10628 i0 90 1.08695652173913 50 3 13 2 1 49 1875 1923 Micoletzkya palliati 28S ribosomal RNA gene, partial sequence blastn 400 63.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Micoletzkya Micoletzkya palliati
11127976 11127976 PRJNA944406_P_NODE_24409_length_287_cov_1.728972_g23450_i0 PRJNA944406 24409 287 1.728972 4.96214964 Caenorhabditis briggsae 6238 Nematoda Nematoda 60.2 1.59e-4   NTclustered gi|268558243|ref|XM_002637066.1| 6238 g23450 i0 75.912 1.13240418118467 137 22 47 8 31 166 722 848 Caenorhabditis briggsae Protein CBR-COL-12.1 (Cbr-col-12.1), partial mRNA blastn 325 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
12403541 12403541 PRJNA944406_P_NODE_29370_length_282_cov_2.210526_g28411_i0 PRJNA944406 29370 282 2.210526 6.23368332 Nematimermis enoplivora 2854046 Nematoda Nematoda 243 1.44e-59   NTclustered gi|2062579518|gb|MZ494738.1| 2854046 g28411 i0 82.456 51.9787234042553 285 42 99 5 3 282 2068 1787 Nematimermis enoplivora isolate WS large subunit ribosomal RNA gene, partial sequence blastn 14658 243 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Mermithida Tetradonematidae Nematimermis Nematimermis enoplivora
13678249 13678249 PRJNA944406_P_NODE_44531_length_268_cov_1.579487_g43572_i0 PRJNA944406 44531 268 1.579487 4.23302516 Paraxonchium laetificans 288434 Nematoda Nematoda 416 7.549999999999998e-112   NTclustered gi|51093893|gb|AY593001.1| 288434 g43572 i0 94.776 97.7761194029851 268 13 100 1 1 268 270 4 Paraxonchium laetificans clone 1 large subunit ribosomal RNA gene, partial sequence blastn 26204 416 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Aporcelaimidae Paraxonchium Paraxonchium laetificans
13678404 13678404 PRJNA944406_P_NODE_58291_length_255_cov_1.692308_g57332_i0 PRJNA944406 58291 255 1.692308 4.3153854 Auanema rhodensis 473160 Nematoda Nematoda 69.4 2.3e-7   NTclustered gi|158827538|gb|EU196004.1| 473160 g57332 i0 84.507 0.443137254901961 71 10 28 1 131 201 690 759 Auanema rhodensis strain SB347 18S ribosomal RNA gene, partial sequence blastn 113 69.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema rhodensis
14013483 14013483 PRJNA944406_P_NODE_6111_length_519_cov_1.908072_g5158_i0 PRJNA944406 6111 519 1.908072 9.90289368 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 363 2.0699999999999998e-95   NTclustered gi|268619129|gb|GU130148.1| 6326 g5158 i0 79.383 99.897880539499 519 103 99 4 1 517 1146 630 Bursaphelenchus xylophilus actin-4 mRNA, complete cds blastn 51847 364 0.997252747252747 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
14952847 14952847 PRJNA944406_P_NODE_75452_length_248_cov_2.622857_g74493_i0 PRJNA944406 75452 248 2.622857 6.50468536 Bealius pinus 2704980 Nematoda Nematoda 224 4.489999999999999e-54   NTclustered gi|1802791394|gb|MT002879.1| 2704980 g74493 i0 83.267 54.9435483870968 251 34 99 7 3 248 4 251 Bealius pinus isolate 28S large subunit ribosomal RNA gene, partial sequence blastn 13626 224 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Sphaerulariidae Bealius Bealius pinus
15287229 15287229 PRJNA944406_P_NODE_107252_length_241_cov_0.916667_g106293_i0 PRJNA944406 107252 241 0.916667 2.20916747 Paracomesoma 1235006 Nematoda Nematoda 200 7.319999999999998e-47   NTclustered gi|385251090|dbj|AB714011.1| 1176277 g106293 i0 82.377 98.7593360995851 244 30 99 11 1 239 243 8 Nematoda sp. ZTSP31 gene for 18S rRNA, partial sequence blastn 23801 200 1 Eukaryota Opisthokonta Metazoa Nematoda         Nematoda sp. ZTSP31
16227216 16227216 PRJNA944406_P_NODE_18893_length_302_cov_2.017467_g17934_i0 PRJNA944406 18893 302 2.017467 6.09275034 Setostephanolaimus sp. OVN-2021 2893399 Nematoda Nematoda 390 5.249999999999998e-104   NTclustered gi|2130729779|gb|OL416399.1| 2893399 g17934 i0 89.869 89.6556291390728 306 27 100 2 1 302 2075 2380 Setostephanolaimus sp. OVN-2021 large subunit ribosomal RNA gene, partial sequence blastn 27076 390 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Camacolaimidae Setostephanolaimus Setostephanolaimus sp. OVN-2021
17503120 17503120 PRJNA944406_P_NODE_7474_length_459_cov_8.756477_g6518_i0 PRJNA944406 7474 459 8.756477 40.19222943 Devibursaphelenchus eproctatus 662734 Nematoda Nematoda 130 2e-25   NTclustered gi|350605240|gb|JN122012.1| 662734 g6518 i0 78.241 21.6122004357298 216 38 47 9 1 214 462 254 Devibursaphelenchus eproctatus isolate Cicheng 18S ribosomal RNA gene, partial sequence blastn 9920 130 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Devibursaphelenchus Devibursaphelenchus eproctatus
19110753 19110753 PRJNA944406_P_NODE_18995_length_301_cov_3.315789_g18036_i0 PRJNA944406 18995 301 3.315789 9.98052489 Eucephalobus 293678 Nematoda Nematoda 556 4.87e-154   NTclustered gi|1116078188|gb|KY119444.1| 293681 g18036 i0 100 99.6312292358804 301 0 100 0 1 301 841 541 Eucephalobus striatus isolate M11_DETRE52015_D11 18S ribosomal RNA gene, partial sequence blastn 29989 556 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cephalobidae Eucephalobus Eucephalobus striatus
20050837 20050837 PRJNA944406_P_NODE_11436_length_370_cov_1.774411_g10477_i0 PRJNA944406 11436 370 1.774411 6.5653207 Turgida turgida 3139357 Nematoda Nematoda 457 6.38e-124   NTclustered gi|1360814131|gb|KY857889.1| 3139357 g10477 i0 88.949 101.310810810811 371 39 100 2 1 370 747 378 Turgida turgida isolate N171 28S ribosomal RNA gene, partial sequence blastn 37485 457 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Physalopteridae Turgida Turgida turgida
22601314 22601314 PRJNA944406_P_NODE_15978_length_322_cov_2.927711_g15019_i0 PRJNA944406 15978 322 2.927711 9.42722942 Plectus aquatilis 70222 Nematoda Nematoda 394 4.36e-105   NTclustered gi|148614850|gb|EF417147.1| 70222 g15019 i0 88.997 40.4937888198758 309 30 95 2 1 306 267 574 Plectus aquatilis large subunit ribosomal RNA gene, partial sequence blastn 13039 394 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae Plectus Plectus aquatilis
23876619 23876619 PRJNA944406_P_NODE_102079_length_242_cov_1.769231_g101120_i0 PRJNA944406 102079 242 1.769231 4.28153902 Nacobbus aberrans 46008 Nematoda Nematoda 82.4 2.78e-11   NTclustered gi|2437461988|gb|ON496986.1| 46008 g101120 i0 77.027 21.6322314049587 148 31 60 3 1 146 4100 4246 Nacobbus aberrans isolate N1-3 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S large subunit ribosomal RNA gene, partial sequence blastn 5235 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Nacobbus Nacobbus aberrans
23877534 23877534 PRJNA944406_P_NODE_76399_length_248_cov_1.348571_g75440_i0 PRJNA944406 76399 248 1.348571 3.34445608 Strongyloides papillosus 174720 Nematoda Nematoda 176 1.28e-39   NTclustered gi|687022666|emb|LM525580.1| 174720 g75440 i0 79.839 9.28225806451613 248 44 99 6 4 248 237397 237153 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000007 blastn 2302 176 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
24211037 24211037 PRJNA944406_P_NODE_44339_length_268_cov_1.907692_g43380_i0 PRJNA944406 44339 268 1.907692 5.11261456 Aphelenchoides 90723 Nematoda Nematoda 318 2.189999999999999e-82   NTclustered gi|1149041756|gb|KX356787.1| 1959770 g43380 i0 88.148 77.6791044776119 270 29 100 3 1 268 46 314 Aphelenchoides sp. Ap005 28S ribosomal RNA gene, partial sequence blastn 20818 318 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides sp. Ap005
25150848 25150848 PRJNA944406_P_NODE_51200_length_262_cov_1.492063_g50241_i0 PRJNA944406 51200 262 1.492063 3.90920506 Basiria sp. SAN-2005 345476 Nematoda Nematoda 226 1.3299999999999994e-54   NTclustered gi|76560642|gb|DQ145667.1| 345476 g50241 i0 85.268 76.2290076335878 224 27 85 5 1 223 816 1034 Basiria sp. SAN-2005 28S ribosomal RNA gene, partial sequence blastn 19972 226 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylenchidae Basiria Basiria sp. SAN-2005

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;