RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA944406" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA944406 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14013290 14013290 PRJNA944406_P_NODE_113171_length_226_cov_2.013072_g112212_i0 PRJNA944406 113171 226 2.013072 4.54954272 Mycoplasma 2093 Bacteria Bacteria 165 2.48e-36   NTclustered gi|2263042568|gb|ON907818.1| 273136 g112212 i0 80.995 174.384955752212 221 31 97 8 6 224 402 191 Mycoplasma amphoriforme strain M5572 23S ribosomal RNA gene, partial sequence blastn 39411 165 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma amphoriforme
20051695 20051695 PRJNA944406_P_NODE_95676_length_244_cov_0.900585_g94717_i0 PRJNA944406 95676 244 0.900585 2.1974274 Metamycoplasma alkalescens 45363 Bacteria Bacteria 60.2 1.32e-4   NTclustered gi|1450418660|emb|LS991949.1| 45363 g94717 i0 97.143 0.14344262295082 35 1 14 0 184 218 232355 232389 Mycoplasma alkalescens strain NCTC10135 genome assembly, chromosome: 1 blastn 35 60.2 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma alkalescens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;