RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJNA944406" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 19 ✖

tax_clade 1

bioproject 1

  • PRJNA944406 · 19 ✖

analysis 1

  • blastn · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2199581 2199581 PRJNA944406_P_NODE_13842_length_342_cov_5.349442_g12883_i0 PRJNA944406 13842 342 5.349442 18.29509164 Rhynchomonas nasuta 127150 Euglenozoa other_Eukaryota 610 4.25e-170   NTclustered gi|62871455|gb|AY998642.1| 127150 g12883 i0 98.83 100.207602339181 342 4 100 0 1 342 1453 1112 Rhynchomonas nasuta strain SCCAP RH3 18S ribosomal RNA gene, partial sequence blastn 34271 610 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta
2535319 2535319 PRJNA944406_P_NODE_93482_length_244_cov_1.649123_g92523_i0 PRJNA944406 93482 244 1.649123 4.02386012 Trypanosoma 5690 Euglenozoa other_Eukaryota 375 1.15e-99   NTclustered gi|2026667531|dbj|LC618031.1| 67003 g92523 i0 94.309 148.200819672131 246 12 100 2 1 244 3277 3522 Trypanosoma theileri OSK-16 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, partial and complete sequence blastn 36161 375 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
3474884 3474884 PRJNA944406_P_NODE_107883_length_241_cov_0.916667_g106924_i0 PRJNA944406 107883 241 0.916667 2.20916747 Angomonas deanei 59799 Euglenozoa other_Eukaryota 58.4 4.66e-4   NTclustered gi|242133530|gb|GQ153664.1| 59799 g106924 i0 100 9.44813278008299 31 0 13 0 4 34 24299 24329 Crithidia sp. ATCC 30255 clone fosmid 6b12 genomic sequence blastn 2277 58.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Angomonas Angomonas deanei
4752976 4752976 PRJNA944406_P_NODE_4524_length_620_cov_4.680073_g3595_i0 PRJNA944406 4524 620 4.680073 29.0164526 Dimastigella trypaniformis 35226 Euglenozoa other_Eukaryota 1022 0   NTclustered gi|59891937|gb|AY753597.1| 35226 g3595 i0 98.949 85.1193548387097 571 6 92 0 50 620 1193 623 Dimastigella trypaniformis isolate SHII 18S ribosomal RNA gene, partial sequence blastn 52774 1022 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Dimastigella Dimastigella trypaniformis
6027390 6027390 PRJNA944406_P_NODE_13765_length_343_cov_2.292593_g12806_i0 PRJNA944406 13765 343 2.292593 7.86359399 Rhynchomonas nasuta 127150 Euglenozoa other_Eukaryota 612 1.19e-170   NTclustered gi|62871455|gb|AY998642.1| 127150 g12806 i0 98.834 100.221574344023 343 4 100 0 1 343 1163 821 Rhynchomonas nasuta strain SCCAP RH3 18S ribosomal RNA gene, partial sequence blastn 34376 612 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta
8577608 8577608 PRJNA944406_P_NODE_5587_length_546_cov_2.116279_g4638_i0 PRJNA944406 5587 546 2.116279 11.55488334 Trypanosoma vivax 5699 Euglenozoa other_Eukaryota 630 5.4199999999999985e-176   NTclustered gi|340052082|emb|HE573017.1| 1055687 g4638 i0 87.638 146.360805860806 542 67 99 0 3 544 339329 338788 Trypanosoma vivax Y486 annotated genomic contig, chromosome 1 blastn 79913 630 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax
9852230 9852230 PRJNA944406_P_NODE_12928_length_352_cov_2.186380_g11969_i0 PRJNA944406 12928 352 2.18638 7.6960576 Rhynchopus sp. ATCC 50230 202688 Euglenozoa other_Eukaryota 357 6.3e-94   NTclustered gi|25986816|gb|AY122622.1| 202688 g11969 i0 84.943 107.869318181818 352 53 100 0 1 352 1027 676 Rhynchopus sp. ATCC50230 heat shock protein 90 (HSP-90) gene, partial cds blastn 37970 357 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Rhynchopus Rhynchopus sp. ATCC 50230
11128040 11128040 PRJNA944406_P_NODE_29149_length_283_cov_1.171429_g28190_i0 PRJNA944406 29149 283 1.171429 3.31514407 Rhynchomonas nasuta 127150 Euglenozoa other_Eukaryota 496 1e-135   NTclustered gi|62871455|gb|AY998642.1| 127150 g28190 i0 98.233 97.5936395759717 283 5 100 0 1 283 46 328 Rhynchomonas nasuta strain SCCAP RH3 18S ribosomal RNA gene, partial sequence blastn 27619 496 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta
11463148 11463148 PRJNA944406_P_NODE_13329_length_348_cov_1.316364_g12370_i0 PRJNA944406 13329 348 1.316364 4.58094672 Kinetoplastea 5653 Euglenozoa other_Eukaryota 599 9.389999999999997e-167   NTclustered gi|45739057|gb|AY490215.1| 351713 g12370 i0 97.701 93.2557471264368 348 8 100 0 1 348 27 374 Bodo caudatus 18S ribosomal RNA gene, partial sequence blastn 32453 599 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Parabodonida   Parabodo Parabodo caudatus
12403334 12403334 PRJNA944406_P_NODE_111190_length_236_cov_2.828221_g110231_i0 PRJNA944406 111190 236 2.828221 6.67460156 Neobodo designis 312471 Euglenozoa other_Eukaryota 379 8.549999999999999e-101   NTclustered gi|77994645|gb|DQ207583.1| 312471 g110231 i0 95.763 93.7118644067797 236 8 100 2 1 236 194 427 Neobodo designis strain HFCC306 18S ribosomal RNA gene, partial sequence blastn 22116 379 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
12404056 12404056 PRJNA944406_P_NODE_7790_length_450_cov_1.429708_g6833_i0 PRJNA944406 7790 450 1.429708 6.433686 Zelonia costaricensis 372075 Euglenozoa other_Eukaryota 438 2.8599999999999993e-118   NTclustered gi|226347438|gb|FJ807259.1| 372075 g6833 i0 84.529 140.642222222222 446 65 99 3 7 450 1 444 Leptomonas costaricensis elongation factor 1 alpha gene, partial cds blastn 63289 438 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Zelonia Zelonia costaricensis
14013467 14013467 PRJNA944406_P_NODE_56891_length_257_cov_1.206522_g55932_i0 PRJNA944406 56891 257 1.206522 3.10076154 Kinetoplastea 5653 Euglenozoa other_Eukaryota 438 1.5399999999999995e-118   NTclustered gi|28076817|gb|AF530516.1| 212100 g55932 i0 97.647 99.6147859922179 255 6 99 0 3 257 2019 1765 Uncultured bodonid clone AT5-9 18S ribosomal RNA gene, partial sequence blastn 25601 438 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae   uncultured bodonid
14952645 14952645 PRJNA944406_P_NODE_5772_length_535_cov_1.738095_g4823_i0 PRJNA944406 5772 535 1.738095 9.29880825 Neobodo designis 312471 Euglenozoa other_Eukaryota 652 0   NTclustered gi|77994646|gb|DQ207584.1| 312471 g4823 i0 98.641 68.3439252336449 368 5 69 0 1 368 957 590 Neobodo designis strain HFCC307 18S ribosomal RNA gene, partial sequence blastn 36564 652 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
17502993 17502993 PRJNA944406_P_NODE_61994_length_252_cov_1.290503_g61035_i0 PRJNA944406 61994 252 1.290503 3.25206756 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 187 6e-43   NTclustered gi|2026667531|dbj|LC618031.1| 67003 g61035 i0 80.377 54.2380952380952 265 36 100 13 1 252 6128 5867 Trypanosoma theileri OSK-16 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, partial and complete sequence blastn 13668 187 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
20385662 20385662 PRJNA944406_P_NODE_19156_length_300_cov_1.696035_g18197_i0 PRJNA944406 19156 300 1.696035 5.088105 Leishmania 5658 Euglenozoa other_Eukaryota 226 1.5499999999999994e-54   NTclustered gi|2593250474|emb|OY748421.1| 5660 g18197 i0 97.71 64.51 131 3 44 0 1 131 991019 990889 Leishmania braziliensis isolate MHOM/BR/75/M2904 genome assembly, chromosome: 27 blastn 19353 226 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
20385834 20385834 PRJNA944406_P_NODE_7036_length_476_cov_3.511166_g6080_i0 PRJNA944406 7036 476 3.511166 16.71315016 Bodo 5712 Euglenozoa other_Eukaryota 872 0   NTclustered gi|45739076|gb|AY490234.1| 75058 g6080 i0 99.789 100.02731092437 475 1 99 0 1 475 1507 1981 Bodo saltans 18S ribosomal RNA gene, partial sequence blastn 47613 872 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
21326572 21326572 PRJNA944406_P_NODE_32397_length_280_cov_1.111111_g31438_i0 PRJNA944406 32397 280 1.111111 3.1111108 uncultured bodonid 212100 Euglenozoa other_Eukaryota 475 1.2899999999999997e-129   NTclustered gi|527891042|gb|KF188181.1| 212100 g31438 i0 99.24 99.775 263 2 94 0 18 280 1 263 Uncultured bodonid clone S5_44 18S ribosomal RNA gene, partial sequence blastn 27937 475 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae   uncultured bodonid
22601704 22601704 PRJNA944406_P_NODE_5018_length_580_cov_2.676529_g4079_i0 PRJNA944406 5018 580 2.676529 15.5238682 Trypanosoma vivax 5699 Euglenozoa other_Eukaryota 436 1.35e-117   NTclustered gi|340056612|emb|HE573026.1| 1055687 g4079 i0 81.004 110.255172413793 558 98 96 7 20 573 518994 518441 Trypanosoma vivax Y486 annotated genomic contig, chromosome 10 blastn 63948 436 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax
24210872 24210872 PRJNA944406_P_NODE_10359_length_387_cov_3.636943_g9400_i0 PRJNA944406 10359 387 3.636943 14.07496941 Bodo 5712 Euglenozoa other_Eukaryota 693 0   NTclustered gi|1509798611|gb|MH614643.1| 75058 g9400 i0 98.969 89.4987080103359 388 3 100 1 1 387 704 1091 Bodo saltans small subunit ribosomal RNA gene, partial sequence blastn 34636 693 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;