RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA944406" and tax_phylum = "Ctenophora"

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tax_superkingdom 1

tax_phylum 1

  • Ctenophora · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA944406 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3811410 3811410 PRJNA944406_P_NODE_19003_length_301_cov_2.539474_g18044_i0 PRJNA944406 19003 301 2.539474 7.64381674 Tentaculata 140493 Ctenophora other_Eukaryota 102 2.74e-17   NTclustered gi|2742502546|gb|PP905548.1| 12997 g18044 i0 94.03 23.8172757475083 67 4 22 0 1 67 4608 4542 Cestum veneris isolate SRR3048955 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7169 102 1 Eukaryota Opisthokonta Metazoa Ctenophora Tentaculata Cestida Cestidae Cestum Cestum veneris
11463121 11463121 PRJNA944406_P_NODE_110369_length_240_cov_2.814371_g109410_i0 PRJNA944406 110369 240 2.814371 6.7544904 Cydippida 50341 Ctenophora other_Eukaryota 128 3.4899999999999998e-25   NTclustered gi|2742502521|gb|PP905523.1| 1403701 g109410 i0 92.308 36.5 91 6 38 1 150 240 5956 5867 Euplokamis dunlapae isolate SRR3048351 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8760 128 1 Eukaryota Opisthokonta Metazoa Ctenophora Tentaculata Cydippida Euplokamidae Euplokamis Euplokamis dunlapae
17837034 17837034 PRJNA944406_P_NODE_89974_length_245_cov_0.895349_g89015_i0 PRJNA944406 89974 245 0.895349 2.19360505 Tentaculata 140493 Ctenophora other_Eukaryota 78.7 3.65e-10   NTclustered gi|2742502546|gb|PP905548.1| 12997 g89015 i0 86.301 26.5959183673469 73 9 29 1 2 73 5776 5848 Cestum veneris isolate SRR3048955 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6516 78.7 1 Eukaryota Opisthokonta Metazoa Ctenophora Tentaculata Cestida Cestidae Cestum Cestum veneris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;