RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA944406" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA944406 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11128346 11128346 PRJNA944406_P_NODE_53909_length_259_cov_2.333333_g52950_i0 PRJNA944406 53909 259 2.333333 6.04333247 Blastocladiella sp. 2169676 Fungi Fungi 239 1.69e-58   NTclustered gi|1866582610|gb|MT730785.1| 2169676 g52950 i0 85.714 82.5057915057915 231 28 88 4 1 228 3756 3984 Blastocladiella sp. isolate JEL0703 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21369 239 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella sp.
12738771 12738771 PRJNA944406_P_NODE_23190_length_288_cov_2.865116_g22231_i0 PRJNA944406 23190 288 2.865116 8.25153408 Blastocladiomycota 451459 Fungi Fungi 145 4.2699999999999995e-30   NTclustered gi|2440036|emb|X90411.1| 4808 g22231 i0 89.474 41.9236111111111 114 12 40 0 1 114 3257 3370 B.emersonii DNA for 28S ribosomal RNA gene blastn 12074 145 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
13678267 13678267 PRJNA944406_P_NODE_46191_length_267_cov_1.190722_g45232_i0 PRJNA944406 46191 267 1.190722 3.17922774 Coelomomyces stegomyiae 143960 Fungi Fungi 141 5.070000000000001e-29   NTclustered gi|11545703|gb|AF322406.1|AF322406 143960 g45232 i0 88.333 54.4044943820225 120 10 44 4 115 232 1305 1188 Coelomomyces stegomyiae 18S small subunit ribosomal RNA gene, partial sequence blastn 14526 141 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Coelomomycetaceae Coelomomyces Coelomomyces stegomyiae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;