RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA944406" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA944406 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3474872 3474872 PRJNA944406_P_NODE_107123_length_241_cov_0.916667_g106164_i0 PRJNA944406 107123 241 0.916667 2.20916747 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 211 3.38e-50   NTclustered gi|551565063|ref|XM_005768979.1| 280463 g106164 i0 82.645 11.5643153526971 242 38 99 4 1 240 344 583 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 2787 211 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
8577010 8577010 PRJNA944406_P_NODE_101307_length_243_cov_0.905882_g100348_i0 PRJNA944406 101307 243 0.905882 2.20129326 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 150 7.55e-32   NTclustered gi|551562710|ref|XM_005768053.1| 280463 g100348 i0 85.034 5.67901234567901 147 22 60 0 77 223 247 393 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 1380 150 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
22601337 22601337 PRJNA944406_P_NODE_18278_length_307_cov_1.311966_g17319_i0 PRJNA944406 18278 307 1.311966 4.02773562 Chrysotila carterae 13221 Haptophyta other_Eukaryota 150 9.869999999999998e-32   NTclustered gi|2429804553|ref|NC_069636.1| 13221 g17319 i0 89.831 39.0293159609121 118 10 38 2 65 180 33443 33560 Chrysotila carterae chloroplast, complete genome blastn 11982 150 1 Eukaryota Haptista   Haptophyta   Isochrysidales Isochrysidaceae Chrysotila Chrysotila carterae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;