RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA944150" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA944150 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17501676 17501676 PRJNA944150_P_NODE_17534_length_210_cov_2.360248_g17283_i0 PRJNA944150 17534 210 2.360248 4.9565208 Desulfobulbus oligotrophicus 1909699 Bacteria Bacteria 119 1.79e-22   NTclustered gi|1951276582|gb|CP054140.1| 1909699 g17283 i0 94.737 0.509523809523809 76 4 36 0 135 210 1232686 1232611 Desulfobulbus oligotrophicus strain Prop6 chromosome, complete genome blastn 107 119 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus oligotrophicus
17501946 17501946 PRJNA944150_P_NODE_42554_length_162_cov_5.265487_g42303_i0 PRJNA944150 42554 162 5.265487 8.53008894 Desulfobulbus oralis 1986146 Bacteria Bacteria 54.7 0.004   NTclustered gi|1343450889|gb|CP021255.1| 1986146 g42303 i0 78.652 0.728395061728395 89 13 56 6 46 131 1109106 1109191 Desulfobulbus oralis strain HOT041/ORNL chromosome, complete genome blastn 118 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus oralis
23876042 23876042 PRJNA944150_P_NODE_22619_length_191_cov_2.042254_g22368_i0 PRJNA944150 22619 191 2.042254 3.90070514 Nitratidesulfovibrio liaohensis 2604158 Bacteria Bacteria 326 8.77e-85   NTclustered gi|2575677524|gb|CP133659.1| 2604158 g22368 i0 97.382 7.93193717277487 191 5 100 0 1 191 2982999 2982809 Nitratidesulfovibrio liaohensis strain KPS chromosome, complete genome blastn 1515 326 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio liaohensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;