RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA944150" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA944150 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8576635 8576635 PRJNA944150_P_NODE_35627_length_167_cov_1.567797_g35376_i0 PRJNA944150 35627 167 1.567797 2.61822099 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 167 4.79e-37   NTclustered gi|2893358456|emb|OZ220748.1| 2026734 g35376 i0 86.755 4.39520958083832 151 18 90 2 18 167 1723276 1723425 MAG: Dehalococcoidia bacterium isolate 6c7b36c8-b3ab-4b4c-a352-7e98d29eb5d7 genome assembly, chromosome: 1 blastn 734 167 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
25485698 25485698 PRJNA944150_P_NODE_33360_length_171_cov_1.549180_g33109_i0 PRJNA944150 33360 171 1.54918 2.6490978 Chloroflexota 200795 Bacteria Bacteria 217 4.8e-52   NTclustered gi|297181775|gb|GU474878.1| 710736 g33109 i0 92.157 188.432748538012 153 12 89 0 1 153 9324 9172 Uncultured Chloroflexi bacterium HF0200_09I09 genomic sequence blastn 32222 217 1 Bacteria   Bacillati Chloroflexota         uncultured Chloroflexi bacterium HF0200_09I09

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;