RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA944150" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA944150 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3474505 3474505 PRJNA944150_P_NODE_41183_length_163_cov_2.868421_g40932_i0 PRJNA944150 41183 163 2.868421 4.67552623 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 54.7 0.004   NTclustered gi|1031970217|gb|CP015651.1| 5693 g40932 i0 100 0.177914110429448 29 0 18 0 75 103 1643152 1643180 Trypanosoma cruzi strain Sylvio X10/cl1 chromosome TcI1, partial sequence blastn 29 54.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
11127105 11127105 PRJNA944150_P_NODE_18389_length_206_cov_2.076433_g18138_i0 PRJNA944150 18389 206 2.076433 4.27745198 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 119 1.75e-22   NTclustered gi|290973038|ref|XM_002669211.1| 5762 g18138 i0 80.921 4.97572815533981 152 27 73 2 38 188 907 757 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_82205), partial mRNA blastn 1025 119 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;