RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA944150" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA944150 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6026711 6026711 PRJNA944150_P_NODE_19425_length_200_cov_2.496689_g19174_i0 PRJNA944150 19425 200 2.496689 4.993378 Schizoplasmodiopsis pseudoendospora 668367 Evosea other_Eukaryota 248 2.06e-61   NTclustered gi|260909289|gb|FJ766475.1| 668367 g19174 i0 89 102.65 200 22 100 0 1 200 1428 1627 Schizoplasmodiopsis pseudoendospora strain PBR-G5-1 culture-collection ATCC:PRA-195 clone 36 18S ribosomal RNA gene, partial sequence blastn 20530 248 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Schizoplasmodiopsis Schizoplasmodiopsis pseudoendospora
8576603 8576603 PRJNA944150_P_NODE_32107_length_173_cov_1.814516_g31856_i0 PRJNA944150 32107 173 1.814516 3.13911268 Dictyostelium discoideum 44689 Evosea other_Eukaryota 80.5 6.67e-11   NTclustered gi|66820157|ref|XM_638626.1| 352472 g31856 i0 94.34 1.73410404624277 53 2 31 1 14 66 148 199 Dictyostelium discoideum AX4 FKBP-type peptidylprolyl cis-trans isomerase (DDB_G0275227) mRNA, complete cds blastn 300 80.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;