RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA942359" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA942359 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2198385 2198385 PRJNA942359_P_NODE_282_length_1319_cov_1.707063_g235_i0 PRJNA942359 282 1319 1.707063 22.51616097 Polyangium aurulentum 2567896 Bacteria Bacteria 1618 0   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g235 i0 89.22 150.458680818802 1308 124 98 16 3 1300 444586 443286 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 198455 1618 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
16226063 16226063 PRJNA942359_P_NODE_7333_length_316_cov_1.283951_g7218_i0 PRJNA942359 7333 316 1.283951 4.05728516 Labilithrix luteola 1391654 Bacteria Bacteria 468 2.48e-127   NTclustered gi|913610804|gb|CP012333.1| 1391654 g7218 i0 93.354 128.78164556962 316 21 100 0 1 316 7090438 7090123 Labilithrix luteola strain DSM 27648, complete genome blastn 40695 468 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
21325182 21325182 PRJNA942359_P_NODE_5037_length_368_cov_1.369492_g4922_i0 PRJNA942359 5037 368 1.369492 5.03973056 Labilithrix luteola 1391654 Bacteria Bacteria 479 1.3499999999999996e-130   NTclustered gi|913610804|gb|CP012333.1| 1391654 g4922 i0 90.986 168.595108695652 355 32 96 0 1 355 3942266 3941912 Labilithrix luteola strain DSM 27648, complete genome blastn 62043 479 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
22600206 22600206 PRJNA942359_P_NODE_938_length_789_cov_9.963687_g837_i0 PRJNA942359 938 789 9.963687 78.61349043 Sandaracinus amylolyticus 927083 Bacteria Bacteria 490 1.4199999999999997e-133   NTclustered gi|2183633570|gb|CP070225.1| 927083 g837 i0 78.375 359.377693282636 800 142 99 28 4 789 9677146 9676364 Sandaracinus strain MSr10575 (SBSa001) chromosome, complete sequence blastn 283549 490 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
23875367 23875367 PRJNA942359_P_NODE_13139_length_253_cov_0.866667_g13024_i0 PRJNA942359 13139 253 0.866667 2.19266751 Chondromyces crocatus 52 Bacteria Bacteria 311 3.43e-80   NTclustered gi|169977285|emb|AM946600.1| 52 g13024 i0 88.716 146.177865612648 257 25 100 3 1 253 1535 1791 Chondromyces crocatus ajudazol biosynthesis gene cluster, strain Cmc5 blastn 36983 311 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;