RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA942359" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA942359 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
923173 923173 PRJNA942359_P_NODE_9921_length_281_cov_1.644231_g9806_i0 PRJNA942359 9921 281 1.644231 4.62028911 Peredibacter starrii 28202 Bacteria Bacteria 472 1.6799999999999998e-128   NTclustered gi|2631252187|gb|CP139487.1| 28202 g9806 i0 96.82 190.686832740214 283 7 100 1 1 281 512763 513045 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 53583 472 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
5087091 5087091 PRJNA942359_P_NODE_12964_length_253_cov_0.866667_g12849_i0 PRJNA942359 12964 253 0.866667 2.19266751 Bdellovibrio 958 Bacteria Bacteria 147 1.02e-30   NTclustered gi|2663425168|dbj|AP029173.1| 3113893 g12849 i0 79.899 4.94466403162055 199 40 79 0 1 199 347795 347993 Bdellovibrio sp. CKG001 DNA, complete genome blastn 1251 147 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. CKG001
13676600 13676600 PRJNA942359_P_NODE_14891_length_250_cov_0.881356_g14776_i0 PRJNA942359 14891 250 0.881356 2.20339 Bacteriovorax stolpii 960 Bacteria Bacteria 257 4.47e-64   NTclustered gi|1700689994|gb|CP030035.1| 960 g14776 i0 85.2 2.86 250 37 100 0 1 250 1747552 1747303 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 715 257 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
20049630 20049630 PRJNA942359_P_NODE_19876_length_242_cov_0.923077_g19761_i0 PRJNA942359 19876 242 0.923077 2.23384634 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 158 4.49e-34   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g19761 i0 82.857 9.00413223140496 175 30 91 0 17 191 3958848 3959022 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 2179 158 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;