RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA942359" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA942359 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3473647 3473647 PRJNA942359_P_NODE_1123_length_724_cov_2.062980_g1019_i0 PRJNA942359 1123 724 2.06298 14.9359752 Capsulimonas corticalis 2219043 Bacteria Bacteria 326 3.87e-84   NTclustered gi|2240447379|dbj|AP025739.1| 2219043 g1019 i0 81.368 292.761049723757 424 57 58 14 1 413 594789 595201 Capsulimonas corticalis AX-7 DNA, complete genome blastn 211959 326 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas Capsulimonas corticalis
9850837 9850837 PRJNA942359_P_NODE_10448_length_276_cov_1.536946_g10333_i0 PRJNA942359 10448 276 1.536946 4.24197096 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 239 1.82e-58   NTclustered gi|2874254000|emb|OY970325.1| 157466 g10333 i0 82.734 74.1847826086957 278 38 99 8 5 276 1304654 1304927 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 20475 239 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
20049798 20049798 PRJNA942359_P_NODE_9936_length_281_cov_1.500000_g9821_i0 PRJNA942359 9936 281 1.5 4.215 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 267 8.5e-67   NTclustered gi|2874254000|emb|OY970325.1| 157466 g9821 i0 87.19 243.697508896797 242 22 85 8 43 280 1305365 1305129 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 68479 267 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;