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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA942359" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 15 ✖

bioproject 1

  • PRJNA942359 · 15 ✖

analysis 1

  • blastn · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4751228 4751228 PRJNA942359_P_NODE_11724_length_263_cov_8.157895_g11609_i0 PRJNA942359 11724 263 8.157895 21.45526385 Microglena reginae 327066 Plants Plants 134 8.34e-27   NTclustered gi|66864261|gb|DQ015716.1| 327066 g11609 i0 95.238 31.0950570342205 84 4 32 0 1 84 1808 1891 Microglena reginae strain SAG 17.89 26S ribosomal RNA gene, partial sequence blastn 8178 134 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Microglena Microglena reginae
4751462 4751462 PRJNA942359_P_NODE_4244_length_394_cov_1.763240_g4129_i0 PRJNA942359 4244 394 1.76324 6.9471656 Ulva prolifera 3117 Plants Plants 571 2.3399999999999996e-158   NTclustered gi|1915399071|gb|MN867372.1| 3117 g4129 i0 100 70.0253807106599 309 0 78 0 86 394 1 309 Ulva prolifera light-harvesting complex II protein (lhcbm-5) mRNA, partial cds blastn 27590 571 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva prolifera
4751532 4751532 PRJNA942359_P_NODE_8584_length_296_cov_1.618834_g8469_i0 PRJNA942359 8584 296 1.618834 4.79174864 Tetradesmus obliquus 3088 Plants Plants 139 2.05e-28   NTclustered gi|87313206|gb|DQ370088.1| 3088 g8469 i0 91.176 1.68243243243243 102 9 34 0 1 102 646 747 Scenedesmus obliquus light-harvesting chlorophyll-a/b binding protein LhcbM3 mRNA, complete cds blastn 498 139 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
5087088 5087088 PRJNA942359_P_NODE_12524_length_256_cov_1.393443_g12409_i0 PRJNA942359 12524 256 1.393443 3.56721408 Chloropyrula 1305687 Plants Plants 473 4.189999999999999e-129   NTclustered gi|425892310|gb|JX070625.1| 1263455 g12409 i0 100 99.27734375 256 0 100 0 1 256 881 626 Chloropyrula uraliensis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 25415 473 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Chloropyrula Chloropyrula uraliensis
9851059 9851059 PRJNA942359_P_NODE_3228_length_442_cov_0.964770_g3113_i0 PRJNA942359 3228 442 0.96477 4.2642834 Tetradesmus obliquus 3088 Plants Plants 608 2.019999999999999e-169   NTclustered gi|87313208|gb|DQ370089.1| 3088 g3113 i0 91.61 101.02036199095 441 35 99 2 3 442 620 181 Scenedesmus obliquus light-harvesting chlorophyll-a/b binding protein LhcbM4 mRNA, complete cds blastn 44651 608 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
14012740 14012740 PRJNA942359_P_NODE_10311_length_278_cov_0.882927_g10196_i0 PRJNA942359 10311 278 0.882927 2.45453706 Desmochloris 138596 Plants Plants 425 1.31e-114   NTclustered gi|371782086|emb|HE610118.1| 138176 g10196 i0 94.245 101.21582733813 278 16 100 0 1 278 765 1042 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 28138 425 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
14950910 14950910 PRJNA942359_P_NODE_16952_length_247_cov_0.896552_g16837_i0 PRJNA942359 16952 247 0.896552 2.21448344 Volvox carteri 3067 Plants Plants 235 2.07e-57   NTclustered gi|302833642|ref|XM_002948339.1| 3068 g16837 i0 84 29.6761133603239 250 34 100 5 1 247 374 128 Volvox carteri f. nagariensis component of cytosolic 80S ribosome and 60S large subunit (rpl30), mRNA blastn 7330 235 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
17836200 17836200 PRJNA942359_P_NODE_11914_length_262_cov_1.238095_g11799_i0 PRJNA942359 11914 262 1.238095 3.2438089 Chlamydomonas 3052 Plants Plants 276 1.2999999999999998e-69   NTclustered gi|2082246856|ref|XM_001696559.2| 3055 g11799 i0 85.769 11.7137404580153 260 37 99 0 1 260 560 301 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g257601v5), mRNA blastn 3069 276 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
18774882 18774882 PRJNA942359_P_NODE_6775_length_326_cov_1.849802_g6660_i0 PRJNA942359 6775 326 1.849802 6.03035452 Ettlia sp. YC001 1191503 Plants Plants 267 1.01e-66   NTclustered gi|1815409459|gb|MN184716.1| 1191503 g6660 i0 88.94 4.39877300613497 217 22 66 2 110 325 49 264 Ettlia sp. YC001 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 2 (rbcS2) mRNA, complete cds; chloroplast blastn 1434 267 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales   Ettlia Ettlia sp. YC001
20049521 20049521 PRJNA942359_P_NODE_13936_length_252_cov_0.871508_g13821_i0 PRJNA942359 13936 252 0.871508 2.19620016 Coelastrella saipanensis 152631 Plants Plants 350 7.24e-92   NTclustered gi|1642520538|ref|NC_042181.1| 152631 g13821 i0 91.765 154.444444444444 255 16 100 5 1 252 109673 109925 Coelastrella saipanensis chloroplast, complete genome blastn 38920 350 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Coelastrella Coelastrella saipanensis
23875349 23875349 PRJNA942359_P_NODE_12419_length_257_cov_1.434783_g12304_i0 PRJNA942359 12419 257 1.434783 3.68739231 Desmochloris mollenhaueri 578869 Plants Plants 464 2.5299999999999998e-126   NTclustered gi|313476264|emb|FM882217.1| 578869 g12304 i0 99.222 99.9922178988327 257 2 100 0 1 257 597 853 Desmochloris sp. TP-2008 partial 18S rRNA gene, ITS1, 5.8S rRNA and ITS2, strain CCAP 6006/2 blastn 25698 464 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris mollenhaueri
23875429 23875429 PRJNA942359_P_NODE_15879_length_248_cov_2.857143_g15764_i0 PRJNA942359 15879 248 2.857143 7.08571464 Desmochloris halophila 138176 Plants Plants 459 1.13e-124   NTclustered gi|371782086|emb|HE610118.1| 138176 g15764 i0 100 98.625 248 0 100 0 1 248 2437 2190 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 24459 459 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
23875437 23875437 PRJNA942359_P_NODE_16119_length_248_cov_0.891429_g16004_i0 PRJNA942359 16119 248 0.891429 2.21074392 Desmochloris halophila 138176 Plants Plants 396 9e-106   NTclustered gi|371782123|emb|HE610155.1| 138176 g16004 i0 96.639 96.1693548387097 238 8 96 0 11 248 2938 2701 Desmochloris halophila plastid 16S rRNA gene (partial), 23S rRNA gene (partial) and ITS1, strain UTEX 2073 blastn 23850 396 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
23875461 23875461 PRJNA942359_P_NODE_17159_length_247_cov_0.896552_g17044_i0 PRJNA942359 17159 247 0.896552 2.21448344 Monoraphidium neglectum 145388 Plants Plants 226 1.2399999999999997e-54   NTclustered gi|926767437|ref|XM_014037317.1| 145388 g17044 i0 83.539 47.165991902834 243 38 98 2 3 244 106 347 Monoraphidium neglectum 60S ribosomal protein L23A mRNA blastn 11650 226 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
25149176 25149176 PRJNA942359_P_NODE_16860_length_247_cov_0.896552_g16745_i0 PRJNA942359 16860 247 0.896552 2.21448344 Monoraphidium neglectum 145388 Plants Plants 206 1.6199999999999998e-48   NTclustered gi|926794116|ref|XM_014050078.1| 145388 g16745 i0 83.796 28.1376518218623 216 35 87 0 1 216 216 1 Monoraphidium neglectum 40S ribosomal protein S26 mRNA blastn 6950 206 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;