RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA940501" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA940501 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12397399 12397399 PRJNA940501_S_NODE_150710_length_211_cov_1.648810_g149892_i0 PRJNA940501 150710 211 1.64881 3.4789891 Thermodesulfobacterium geofontis 1295609 Bacteria Bacteria 52.8 0.019   NTclustered gi|334901311|gb|CP002829.1| 795359 g149892 i0 100 0.132701421800948 28 0 13 0 31 58 1126701 1126674 Thermodesulfobacterium geofontis OPF15, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Thermodesulfobacterium Thermodesulfobacterium geofontis
12398984 12398984 PRJNA940501_S_NODE_257050_length_177_cov_1.402985_g256232_i0 PRJNA940501 257050 177 1.402985 2.48328345 Geopsychrobacteraceae bacterium 3065857 Bacteria Bacteria 52.8 0.015   NTclustered gi|2621701823|emb|OY759353.1| 3065857 g256232 i0 100 0.15819209039548 28 0 16 0 108 135 2192845 2192872 MAG: Geopsychrobacteraceae bacterium isolate b20cad9c-d1d2-40c5-8f7b-178437520c26 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae   Geopsychrobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;