contig_metadata
9 rows where analysis = "blastn", bioproject = "PRJNA940501" and tax_phylum = "Spirochaetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 920812 | 920812 | PRJNA940501_S_NODE_353021_length_157_cov_1.236842_g352203_i0 | PRJNA940501 | 353021 | 157 | 1.236842 | 1.94184194 | Treponema rectale | 744512 | Bacteria | Bacteria | 147 | 5.78e-31 | NTclustered | gi|1919550644|gb|CP031517.1| | 744512 | g352203 | i0 | 83.439 | 1 | 157 | 26 | 100 | 0 | 1 | 157 | 1269446 | 1269290 | Treponema rectale strain CHPA chromosome, complete genome | blastn | 157 | 147 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema rectale | ||
| 6023440 | 6023440 | PRJNA940501_S_NODE_292325_length_169_cov_1.119048_g291507_i0 | PRJNA940501 | 292325 | 169 | 1.119048 | 1.89119112 | Brachyspira pilosicoli | 52584 | Bacteria | Bacteria | 52.8 | 0.014 | NTclustered | gi|404429427|emb|HE793032.1| | 1161918 | g291507 | i0 | 91.892 | 0.218934911242604 | 37 | 3 | 22 | 0 | 79 | 115 | 2815687 | 2815723 | Brachyspira pilosicoli WesB complete genome | blastn | 37 | 52.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira pilosicoli | ||
| 9846153 | 9846153 | PRJNA940501_S_NODE_141388_length_215_cov_2.075581_g140570_i0 | PRJNA940501 | 141388 | 215 | 2.075581 | 4.46249915 | Treponema succinifaciens | 167 | Bacteria | Bacteria | 375 | 9.899999999999998e-100 | NTclustered | gi|328447254|gb|CP002631.1| | 869209 | g140570 | i0 | 98.14 | 2 | 215 | 4 | 100 | 0 | 1 | 215 | 1740372 | 1740586 | Treponema succinifaciens DSM 2489, complete genome | blastn | 430 | 375 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema succinifaciens | ||
| 9846506 | 9846506 | PRJNA940501_S_NODE_162768_length_206_cov_1.595092_g161950_i0 | PRJNA940501 | 162768 | 206 | 1.595092 | 3.28588952 | Treponema bryantii | 163 | Bacteria | Bacteria | 58.4 | 3.87e-4 | NTclustered | gi|2581915939|dbj|AP025286.1| | 163 | g161950 | i0 | 100 | 0.150485436893204 | 31 | 0 | 15 | 0 | 82 | 112 | 2322952 | 2322982 | Treponema bryantii JCM 32280 DNA, complete genome | blastn | 31 | 58.4 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema bryantii | ||
| 16560136 | 16560136 | PRJNA940501_S_NODE_204233_length_191_cov_25.108108_g203415_i0 | PRJNA940501 | 204233 | 191 | 25.108108 | 47.95648628 | Borrelia | 138 | Bacteria | Bacteria | 52.8 | 0.016 | NTclustered | gi|2668652688|gb|CP129313.1| | 142 | g203415 | i0 | 100 | 0.293193717277487 | 28 | 0 | 15 | 0 | 40 | 67 | 11655 | 11682 | Borrelia turicatae strain BTCAM1 plasmid lp32, complete sequence | blastn | 56 | 52.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Borreliaceae | Borrelia | Borrelia turicatae | ||
| 16560405 | 16560405 | PRJNA940501_S_NODE_260713_length_176_cov_1.413534_g259895_i0 | PRJNA940501 | 260713 | 176 | 1.413534 | 2.48781984 | Leptospira | 171 | Bacteria | Bacteria | 52.8 | 0.015 | NTclustered | gi|1464599676|gb|CP030142.1| | 1137606 | g259895 | i0 | 100 | 0.795454545454545 | 28 | 0 | 16 | 0 | 6 | 33 | 352889 | 352862 | Leptospira mayottensis strain VS2413 chromosome I, complete sequence | blastn | 140 | 52.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospira | Leptospira mayottensis | ||
| 21660732 | 21660732 | PRJNA940501_S_NODE_78077_length_254_cov_2.227488_g77259_i0 | PRJNA940501 | 78077 | 254 | 2.227488 | 5.65781952 | Treponema | 157 | Bacteria | Bacteria | 429 | 9.119999999999999e-116 | NTclustered | gi|1807378492|gb|CP048020.1| | 69710 | g77259 | i0 | 97.244 | 194.07874015748 | 254 | 6 | 100 | 1 | 1 | 254 | 2079449 | 2079701 | Treponema vincentii strain OMZ 804 chromosome, complete genome | blastn | 49296 | 429 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 22596875 | 22596875 | PRJNA940501_S_NODE_261298_length_176_cov_1.330827_g260480_i0 | PRJNA940501 | 261298 | 176 | 1.330827 | 2.34225552 | Treponema peruense | 2787628 | Bacteria | Bacteria | 52.8 | 0.015 | NTclustered | gi|1946838279|gb|CP064936.1| | 2787628 | g260480 | i0 | 100 | 0.159090909090909 | 28 | 0 | 16 | 0 | 63 | 90 | 265934 | 265907 | Treponema peruense strain RCC2812 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema peruense | ||
| 22935570 | 22935570 | PRJNA940501_S_NODE_233758_length_183_cov_1.342857_g232940_i0 | PRJNA940501 | 233758 | 183 | 1.342857 | 2.45742831 | Treponema | 157 | Bacteria | Bacteria | 333 | 4.97e-87 | NTclustered | gi|3132611|gb|AF061347.1|AF061347 | 76133 | g232940 | i0 | 99.454 | 104.098360655738 | 183 | 1 | 100 | 0 | 1 | 183 | 264 | 82 | Treponema sp. I:Q:AT20 16S ribosomal RNA gene, complete sequence | blastn | 19050 | 333 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. I:Q:AT20 |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;