RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA940501" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA940501 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6023148 6023148 PRJNA940501_S_NODE_263925_length_175_cov_1.780303_g263107_i0 PRJNA940501 263925 175 1.780303 3.11553025 Dysidea avara 196820 Porifera other_Eukaryota 52.8 0.015   NTclustered gi|2749588844|ref|XM_066060469.1| 196820 g263107 i0 100 0.16 28 0 16 0 17 44 863 890 PREDICTED: Dysidea avara uncharacterized protein (LOC136265593), transcript variant X1, mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Dictyoceratida Dysideidae Dysidea Dysidea avara
9848856 9848856 PRJNA940501_S_NODE_345628_length_158_cov_1.634783_g344810_i0 PRJNA940501 345628 158 1.634783 2.58295714 Oscarella lobularis 121494 Porifera other_Eukaryota 52.8 0.013   NTclustered gi|2746760448|ref|XM_065984227.1| 121494 g344810 i0 100 0.177215189873418 28 0 18 0 35 62 3625 3598 PREDICTED: Oscarella lobularis DNA-directed RNA polymerase I subunit RPA1-like (LOC136194969), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Porifera Homoscleromorpha Homosclerophorida Oscarellidae Oscarella Oscarella lobularis
16220547 16220547 PRJNA940501_S_NODE_108053_length_233_cov_1.200000_g107235_i0 PRJNA940501 108053 233 1.2 2.796 Sycon ciliatum 27933 Porifera other_Eukaryota 54.7 0.006   NTclustered gi|2732940970|ref|XM_065337666.1| 27933 g107235 i0 96.875 0.394849785407725 32 1 14 0 95 126 1096 1065 PREDICTED: Sycon ciliatum ankycorbin-like (LOC135824922), transcript variant X1, mRNA blastn 92 54.7 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
21320944 21320944 PRJNA940501_S_NODE_19077_length_368_cov_4.467692_g18259_i0 PRJNA940501 19077 368 4.467692 16.44110656 Sycon ciliatum 27933 Porifera other_Eukaryota 302 3.1400000000000002e-77   NTclustered gi|457866940|emb|HF570264.1| 27933 g18259 i0 83.436 50.5489130434783 326 53 88 1 1 325 93 418 Sycon ciliatum mRNA for 40S ribosomal protein S23 (rps23 gene) blastn 18602 302 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;