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contig_metadata

24 rows where analysis = "blastn", bioproject = "PRJNA940501" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 24 ✖

tax_clade 1

bioproject 1

  • PRJNA940501 · 24 ✖

analysis 1

  • blastn · 24 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
917450 917450 PRJNA940501_S_NODE_107821_length_233_cov_1.431579_g107003_i0 PRJNA940501 107821 233 1.431579 3.33557907 Nothophytophthora sp. 2853999 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.021   NTclustered gi|2240249467|gb|MW648547.1| 2853999 g107003 i0 96.774 0.133047210300429 31 1 13 0 51 81 6788 6818 Nothophytophthora sp. culture ICMP:18719 mitochondrion, complete genome blastn 31 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Nothophytophthora Nothophytophthora sp.
921640 921640 PRJNA940501_S_NODE_5941_length_614_cov_26.684764_g5282_i0 PRJNA940501 5941 614 26.684764 163.84445096 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 7.13e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g5282 i0 80.533 55.0944625407166 375 65 60 4 54 421 68 441 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
922149 922149 PRJNA940501_S_NODE_88561_length_246_cov_1.546798_g87743_i0 PRJNA940501 88561 246 1.546798 3.80512308 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 132 2.77e-26   NTclustered gi|2795049776|ref|XM_067938656.1| 4785 g87743 i0 84.173 1.1219512195122 139 18 56 4 110 246 229 365 Phytophthora cinnamomi polyadenylate-binding protein 1-B (IUM83_13951), partial mRNA blastn 276 132 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
1258358 1258358 PRJNA940501_S_NODE_6541_length_579_cov_23.662313_g5849_i0 PRJNA940501 6541 579 23.662313 137.00479227 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 427 8.13e-115   NTclustered gi|9858457|gb|AF085344.1|AF085344 82926 g5849 i0 86.216 66.4490500863558 399 50 69 4 26 422 88 483 Pythium splendens calmodulin mRNA, complete cds blastn 38474 431 0.990719257540603 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
5085454 5085454 PRJNA940501_S_NODE_114084_length_229_cov_1.897849_g113266_i0 PRJNA940501 114084 229 1.897849 4.34607421 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 128 3.3e-25   NTclustered gi|698807045|ref|XM_009838250.1| 112090 g113266 i0 81.646 1.91266375545852 158 25 68 4 23 178 361 516 Aphanomyces astaci 60S ribosomal protein mRNA blastn 438 128 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
7299540 7299540 PRJNA940501_S_NODE_46206_length_290_cov_4.421053_g45388_i0 PRJNA940501 46206 290 4.421053 12.8210537 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 222 1.9299999999999999e-53   NTclustered gi|813141452|ref|XM_012343573.1| 695850 g45388 i0 82.677 18.1275862068966 254 41 87 3 12 264 767 516 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L8 mRNA blastn 5257 222 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
7636192 7636192 PRJNA940501_S_NODE_322326_length_163_cov_1.175000_g321508_i0 PRJNA940501 322326 163 1.175 1.91525 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.014   NTclustered gi|698812251|ref|XM_009840853.1| 112090 g321508 i0 100 0.398773006134969 28 0 17 0 21 48 210 183 Aphanomyces astaci hypothetical protein partial mRNA blastn 65 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
7636465 7636465 PRJNA940501_S_NODE_5026_length_686_cov_6.930016_g4456_i0 PRJNA940501 5026 686 6.930016 47.53990976 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 331 7.85e-86   NTclustered gi|166301|gb|J05597.1|ACKBTUB 4767 g4456 i0 85.942 42.8877551020408 313 40 45 2 1 310 1231 1542 A.klebsiana beta-tubulin gene, complete cds blastn 29421 333 0.993993993993994 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
9849751 9849751 PRJNA940501_S_NODE_6168_length_600_cov_3.278276_g5494_i0 PRJNA940501 6168 600 3.278276 19.669656 Phytophthora kernoviae 325452 SAR_Eukaryotes SAR_Eukaryotes 318 5.3e-82   NTclustered gi|2248513156|ref|NC_063798.1| 325452 g5494 i0 80 60.4216666666667 435 83 72 4 168 600 19707 20139 Phytophthora kernoviae isolate 00844/4 mitochondrion, complete genome blastn 36253 318 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora kernoviae
10185858 10185858 PRJNA940501_S_NODE_11568_length_440_cov_4.209068_g10762_i0 PRJNA940501 11568 440 4.209068 18.5198992 root 1 Root_unresolved Root_unresolved 206 3.0899999999999996e-48   NTclustered gi|50261276|ref|NC_005984.1| 4770 g10762 i0 79.461 57.9159090909091 297 55 67 6 138 431 15280 15573 Saprolegnia ferax mitochondrion, complete genome blastn 25483 206 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
12401208 12401208 PRJNA940501_S_NODE_80150_length_252_cov_3.928230_g79332_i0 PRJNA940501 80150 252 3.92823 9.8991396 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 100 8.05e-17   NTclustered gi|675165376|ref|XM_008893325.1| 761204 g79332 i0 95.312 20.297619047619 64 1 25 2 67 129 638 700 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 5115 100 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
13672090 13672090 PRJNA940501_S_NODE_162011_length_206_cov_2.171779_g161193_i0 PRJNA940501 162011 206 2.171779 4.47386474 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 124 3.76e-24   NTclustered gi|675192356|ref|XM_008906815.1| 761204 g161193 i0 89.691 45.3495145631068 97 10 47 0 65 161 320 416 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 9342 124 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
13673991 13673991 PRJNA940501_S_NODE_29431_length_326_cov_2.155477_g28613_i0 PRJNA940501 29431 326 2.155477 7.02685502 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 220 7.94e-53   NTclustered gi|1111669769|ref|NC_032052.1| 157072 g28613 i0 84.211 51.0276073619632 228 34 70 2 2 228 9533 9307 Aphanomyces invadans isolate NJM9701 mitochondrion, complete genome blastn 16635 220 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
14950190 14950190 PRJNA940501_S_NODE_92232_length_243_cov_2.380000_g91414_i0 PRJNA940501 92232 243 2.38 5.7834 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 283 7.14e-72   NTclustered gi|1780534031|gb|MK753001.1| 2052683 g91414 i0 87.654 84.7654320987654 243 30 100 0 1 243 320 78 Globisporangium ultimum var. ultimum isolate KSSO_5-45 beta-tubulin mRNA, complete cds blastn 20598 283 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
16223951 16223951 PRJNA940501_S_NODE_3673_length_904_cov_4.743322_g3270_i0 PRJNA940501 3673 904 4.743322 42.87963088 Achlya ambisexualis 4768 SAR_Eukaryotes SAR_Eukaryotes 547 9.549999999999997e-151   NTclustered gi|22086552|gb|AF402101.1| 4768 g3270 i0 78.035 82.212389380531 906 174 99 19 10 904 648 1539 Achlya ambisexualis isolate JS855 heat shock protein Hsp90 mRNA, complete cds blastn 74320 547 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya ambisexualis
17498864 17498864 PRJNA940501_S_NODE_324814_length_162_cov_1.579832_g323996_i0 PRJNA940501 324814 162 1.579832 2.55932784 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 108 2.84e-19   NTclustered gi|328802538|emb|FR832890.1| 890382 g323996 i0 82.54 0.777777777777778 126 19 77 3 36 160 2030 1907 Albugo laibachii Nc14, mitochondrial genomic contig NODE_36_length_2553_cov_1396.121460 blastn 126 108 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
18769908 18769908 PRJNA940501_S_NODE_145475_length_213_cov_2.441176_g144657_i0 PRJNA940501 145475 213 2.441176 5.19970488 Achlya klebsiana 4767 SAR_Eukaryotes SAR_Eukaryotes 124 3.92e-24   NTclustered gi|166303|gb|J05116.1|ACKCAL 4767 g144657 i0 91.209 7.8075117370892 91 8 43 0 123 213 948 858 A.klebsiana calmodulin gene, complete cds blastn 1663 124 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
18770436 18770436 PRJNA940501_S_NODE_179955_length_200_cov_0.898089_g179137_i0 PRJNA940501 179955 200 0.898089 1.796178 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 159 9.95e-35   NTclustered gi|675183624|ref|XM_008902449.1| 761204 g179137 i0 81.675 26.075 191 35 96 0 9 199 440 250 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 5215 159 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
21323344 21323344 PRJNA940501_S_NODE_39477_length_302_cov_2.853282_g38659_i0 PRJNA940501 39477 302 2.853282 8.61691164 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 272 1.98e-68   NTclustered gi|166044823|emb|CU351082.1| 100861 g38659 i0 86.166 63.1258278145695 253 33 83 2 44 295 401 150 Aphanomyces euteiches cDNA blastn 19064 272 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
22594538 22594538 PRJNA940501_S_NODE_10818_length_453_cov_3.834146_g10015_i0 PRJNA940501 10818 453 3.834146 17.36868138 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 148 5.44e-31   NTclustered gi|675185160|ref|XM_008903217.1| 761204 g10015 i0 83.648 0.695364238410596 159 25 35 1 250 407 648 490 Phytophthora parasitica INRA-310 ubiquitin-conjugating enzyme E2-16 kDa mRNA blastn 315 148 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
22594838 22594838 PRJNA940501_S_NODE_128238_length_222_cov_1.050279_g127420_i0 PRJNA940501 128238 222 1.050279 2.33161938 Nothophytophthora intricata 2025991 SAR_Eukaryotes SAR_Eukaryotes 158 4.0599999999999986e-34   NTclustered gi|2499019119|gb|OQ605407.1| 2025991 g127420 i0 81.579 20.1081081081081 190 35 86 0 9 198 417 606 Nothophytophthora intricata isolate TJ275 cytochrome oxidase subunit II (cox2) gene, partial cds; hypothetical protein (orf32) gene, complete cds; and cytochrome oxidase subunit I (coxI) gene, partial cds; mitochondrial blastn 4464 158 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Nothophytophthora Nothophytophthora intricata
22599042 22599042 PRJNA940501_S_NODE_79098_length_253_cov_2.757143_g78280_i0 PRJNA940501 79098 253 2.757143 6.97557179 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 128 3.71e-25   NTclustered gi|698820854|ref|XM_009845154.1| 112090 g78280 i0 80.702 2.53754940711462 171 28 66 4 72 238 288 119 Aphanomyces astaci hypothetical protein mRNA blastn 642 128 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
25145254 25145254 PRJNA940501_S_NODE_202900_length_192_cov_1.422819_g202082_i0 PRJNA940501 202900 192 1.422819 2.73181248 Plasmopara halstedii 4781 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.017   NTclustered gi|1378147635|ref|XM_024722424.1| 4781 g202082 i0 100 0.145833333333333 28 0 15 0 17 44 1578 1605 Plasmopara halstedii Zinc finger, BED-type predicted (PHALS_04585), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
25147652 25147652 PRJNA940501_S_NODE_4680_length_726_cov_8.071742_g4147_i0 PRJNA940501 4680 726 8.071742 58.60084692 Phytophthora cactorum 29920 SAR_Eukaryotes SAR_Eukaryotes 183 2.47e-41   NTclustered gi|1490229970|gb|MH094138.1| 29920 g4147 i0 90.141 19.9889807162534 142 12 20 2 565 706 675 536 Phytophthora cactorum isolate KRJ1 ATP synthase protein 9 (atp9) gene, partial cds; NADH dehydrogenase subunit 9 (nad9) gene, complete cds; and apocytochrome b (cob) gene, partial cds; mitochondrial blastn 14512 183 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;