RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA940501" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA940501 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2196715 2196715 PRJNA940501_S_NODE_43162_length_295_cov_9.638889_g42344_i0 PRJNA940501 43162 295 9.638889 28.43472255 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 111 4.45e-20   NTclustered gi|470459156|ref|XM_004341277.1| 1257118 g42344 i0 92.308 6.76271186440678 78 6 26 0 27 104 1089 1166 Acanthamoeba castellanii str. Neff ribosomal protein L3, putative (ACA1_264110), partial mRNA blastn 1995 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
3470854 3470854 PRJNA940501_S_NODE_271083_length_173_cov_5.100000_g270265_i0 PRJNA940501 271083 173 5.1 8.823 Vannella septentrionalis 197531 Discosea other_Eukaryota 281 1.7e-71   NTclustered gi|300078499|gb|GU001161.1| 197531 g270265 i0 95.954 16.6531791907514 173 7 100 0 1 173 1109 937 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 2881 281 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
14950114 14950114 PRJNA940501_S_NODE_8832_length_495_cov_18.805310_g8051_i0 PRJNA940501 8832 495 18.80531 93.0862845 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 200 1.63e-46   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g8051 i0 79.054 9.41818181818182 296 58 59 4 3 296 229 522 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 4662 200 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21319599 21319599 PRJNA940501_S_NODE_10557_length_457_cov_10.429952_g9759_i0 PRJNA940501 10557 457 10.429952 47.66488064 Vannellidae sp. 2491907 Discosea other_Eukaryota 226 2.4699999999999993e-54   NTclustered gi|1523769315|gb|MH535957.1| 2491907 g9759 i0 80.769 39.6542669584245 312 41 67 14 112 419 699 403 Vannellidae sp. strain 151-1SVA_C2 18S ribosomal RNA gene, partial sequence; mitochondrial blastn 18122 226 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   Vannellidae sp.
21320387 21320387 PRJNA940501_S_NODE_15377_length_395_cov_8.139205_g14563_i0 PRJNA940501 15377 395 8.139205 32.14985975 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 189 2.7599999999999998e-43   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g14563 i0 79.211 18.2 279 52 70 5 3 278 43 318 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 7189 189 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22596201 22596201 PRJNA940501_S_NODE_218518_length_187_cov_1.812500_g217700_i0 PRJNA940501 218518 187 1.8125 3.389375 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 207 3.23e-49   NTclustered gi|470455615|ref|XM_004340928.1| 1257118 g217700 i0 86.631 8.19786096256684 187 25 100 0 1 187 369 183 Acanthamoeba castellanii str. Neff ribosomal protein S23 (S12), putative (ACA1_232480), partial mRNA blastn 1533 207 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23871183 23871183 PRJNA940501_S_NODE_182099_length_199_cov_1.320513_g181281_i0 PRJNA940501 182099 199 1.320513 2.62782087 Vannella septentrionalis 197531 Discosea other_Eukaryota 305 1.2e-78   NTclustered gi|300078499|gb|GU001161.1| 197531 g181281 i0 98.276 87.8643216080402 174 3 87 0 26 199 2274 2447 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17485 305 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
25145591 25145591 PRJNA940501_S_NODE_226200_length_185_cov_1.387324_g225382_i0 PRJNA940501 226200 185 1.387324 2.5665494 Vannella septentrionalis 197531 Discosea other_Eukaryota 309 8.49e-80   NTclustered gi|300078499|gb|GU001161.1| 197531 g225382 i0 96.757 1 185 6 100 0 1 185 1531 1347 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 185 309 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;