RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA940501" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA940501 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
918210 918210 PRJNA940501_S_NODE_15461_length_395_cov_1.622159_g14647_i0 PRJNA940501 15461 395 1.622159 6.40752805 Synchytrium sp. 1971732 Fungi Fungi 93.5 2.23e-14   NTclustered gi|1168020523|gb|KY800404.1| 1971732 g14647 i0 83.168 0.255696202531646 101 17 26 0 54 154 1006 906 Synchytrium sp. voucher BPI 893319 large subunit ribosomal RNA gene, partial sequence blastn 101 93.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium sp.
1258417 1258417 PRJNA940501_S_NODE_76681_length_255_cov_3.419811_g75863_i0 PRJNA940501 76681 255 3.419811 8.72051805 Gaertneriomyces 109896 Fungi Fungi 472 1.5e-128   NTclustered gi|1866582441|gb|MT730616.1| 109897 g75863 i0 100 97.7058823529412 255 0 100 0 1 255 2771 2517 Gaertneriomyces semiglobifer isolate ARG094 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24915 472 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Gaertneriomyces Gaertneriomyces semiglobifer
3471473 3471473 PRJNA940501_S_NODE_328803_length_161_cov_2.228814_g327985_i0 PRJNA940501 328803 161 2.228814 3.58839054 Spizellomyces punctatus 109760 Fungi Fungi 121 3.62e-23   NTclustered gi|1026990807|ref|XM_016753365.1| 645134 g327985 i0 94.805 40.7701863354037 77 4 48 0 1 77 1402 1478 Spizellomyces punctatus DAOM BR117 tubulin alpha chain (SPPG_05136), mRNA blastn 6564 121 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
4749034 4749034 PRJNA940501_S_NODE_32784_length_317_cov_1.916058_g31966_i0 PRJNA940501 32784 317 1.916058 6.07390386 Spizellomyces punctatus 109760 Fungi Fungi 60.2 1.77e-4   NTclustered gi|1026975669|ref|XM_016751979.1| 645134 g31966 i0 100 0.100946372239748 32 0 10 0 27 58 812 843 Spizellomyces punctatus DAOM BR117 uncharacterized protein (SPPG_03729), mRNA blastn 32 60.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
12401220 12401220 PRJNA940501_S_NODE_80670_length_252_cov_1.803828_g79852_i0 PRJNA940501 80670 252 1.803828 4.54564656 Spizellomyces punctatus 109760 Fungi Fungi 106 1.73e-18   NTclustered gi|1026981961|ref|XM_016752543.1| 645134 g79852 i0 94.203 0.273809523809524 69 4 27 0 61 129 81 149 Spizellomyces punctatus DAOM BR117 40S ribosomal protein S30 (SPPG_04300), mRNA blastn 69 106 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
15285891 15285891 PRJNA940501_S_NODE_293412_length_168_cov_6.072000_g292594_i0 PRJNA940501 293412 168 6.072 10.20096 Eukaryota 2759 Fungi Fungi 56.5 0.001   NTclustered gi|82398658|gb|DQ273838.1| 109929 g292594 i0 75 1.73809523809524 128 29 75 3 43 168 3057 3183 Podochytrium dentatum isolate AFTOL-ID 1539 28S ribosomal RNA gene, partial sequence blastn 292 56.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Podochytrium Podochytrium dentatum
21319987 21319987 PRJNA940501_S_NODE_128457_length_221_cov_5.106742_g127639_i0 PRJNA940501 128457 221 5.106742 11.28589982 Fimicolochytrium jonesii 1396493 Fungi Fungi 143 1.13e-29   NTclustered gi|2432095815|ref|XM_053071167.1| 1396493 g127639 i0 78.605 3.03619909502262 215 46 97 0 1 215 352 566 Fimicolochytrium jonesii putative 40S ribosomal protein RPS14 (EV422DRAFT_540950), mRNA blastn 671 143 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;