RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA940501" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA940501 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12397109 12397109 PRJNA940501_S_NODE_132910_length_219_cov_2.136364_g132092_i0 PRJNA940501 132910 219 2.136364 4.67863716 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 54.7 0.005   NTclustered gi|551553448|ref|XM_005763975.1| 280463 g132092 i0 100 0.264840182648402 29 0 13 0 81 109 2383 2411 Emiliania huxleyi CCMP1516 Apurinic/apyrimidinic endonuclease partial mRNA blastn 58 54.7 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
21322777 21322777 PRJNA940501_S_NODE_334997_length_160_cov_1.606838_g334179_i0 PRJNA940501 334997 160 1.606838 2.5709408 Meringosphaera mediterranea 2837474 Root_unresolved Root_unresolved 104 3.61e-18   NTclustered gi|2526806211|gb|OR195157.1| 2837474 g334179 i0 81.89 50.46875 127 20 79 3 35 160 2949 2825 Meringosphaera mediterranea isolate S7 internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 8075 104 1 Eukaryota Haptista     Centroplasthelida     Meringosphaera Meringosphaera mediterranea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;