RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA939415" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA939415 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5084545 5084545 PRJNA939415_P_NODE_11044_length_468_cov_1.496203_g10626_i0 PRJNA939415 11044 468 1.496203 7.00223004 Rhodothermales 1853224 Bacteria Bacteria 89.8 3.47e-13   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g10626 i0 80 0.576923076923077 135 16 27 9 339 466 2387855 2387725 Rhodothermaceae bacterium RA chromosome, complete genome blastn 270 89.8 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA
5084887 5084887 PRJNA939415_P_NODE_57984_length_275_cov_10.529703_g57562_i0 PRJNA939415 57984 275 10.529703 28.95668325 Rhodothermus 29548 Bacteria Bacteria 193 1.43e-44   NTclustered gi|2844596544|gb|CP172416.1| 29549 g57562 i0 81.513 5.49090909090909 238 40 86 3 8 243 197329 197564 Rhodothermus marinus strain ISCAR-493 chromosome blastn 1510 193 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
21317622 21317622 PRJNA939415_P_NODE_43037_length_290_cov_3.764977_g42615_i0 PRJNA939415 43037 290 3.764977 10.9184333 Rhodothermales bacterium 2306054 Bacteria Bacteria 87.9 7.36e-13   NTclustered gi|2891482048|emb|OZ219799.1| 2306054 g42615 i0 91.935 0.213793103448276 62 5 21 0 108 169 1327777 1327838 MAG: Rhodothermales bacterium isolate da3e7c24-c5f3-4507-9669-19e8aa5a93cb genome assembly, chromosome: 1 blastn 62 87.9 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;