RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA939415" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA939415 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11118428 11118428 PRJNA939415_P_NODE_105249_length_226_cov_4.830065_g104827_i0 PRJNA939415 105249 226 4.830065 10.9159469 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 65.8 2.58e-6   NTclustered gi|813226982|ref|XM_012357178.1| 695850 g104827 i0 93.182 0.194690265486726 44 3 19 0 53 96 792 835 Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA blastn 44 65.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
25140881 25140881 PRJNA939415_P_NODE_103260_length_230_cov_2.108280_g102838_i0 PRJNA939415 103260 230 2.10828 4.849044 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 420 4.89e-113   NTclustered gi|166046608|emb|CU367725.1| 100861 g102838 i0 99.565 3.93478260869565 230 1 100 0 1 230 574 803 Aphanomyces euteiches cDNA blastn 905 420 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;