RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA939415" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA939415 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9843732 9843732 PRJNA939415_P_NODE_54888_length_279_cov_1.330097_g54466_i0 PRJNA939415 54888 279 1.330097 3.71097063 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 279 1.08e-70   NTclustered gi|290980060|ref|XM_002672705.1| 5762 g54466 i0 85.145 0.989247311827957 276 38 99 2 4 279 385 113 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_81126), partial mRNA blastn 276 279 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
13668380 13668380 PRJNA939415_P_NODE_104551_length_227_cov_6.474026_g104129_i0 PRJNA939415 104551 227 6.474026 14.69603902 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 52.8 0.02   NTclustered gi|290982519|ref|XM_002673932.1| 5762 g104129 i0 94.286 0.154185022026432 35 1 15 1 193 226 508 474 Naegleria gruberi peptidase C2, calpain (NAEGRDRAFT_58860), partial mRNA blastn 35 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
14943009 14943009 PRJNA939415_P_NODE_20592_length_343_cov_5.674074_g20172_i0 PRJNA939415 20592 343 5.674074 19.46207382 Naegleria sp. 37103 Heterolobosea other_Eukaryota 634 2.5299999999999996e-177   NTclustered gi|2651357798|gb|PP174311.1| 37103 g20172 i0 100 56.7084548104956 343 0 100 0 1 343 3030 3372 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19451 634 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
22592910 22592910 PRJNA939415_P_NODE_63018_length_271_cov_1.287879_g62596_i0 PRJNA939415 63018 271 1.287879 3.49015209 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 311 3.71e-80   NTclustered gi|290995599|ref|XM_002680325.1| 5762 g62596 i0 87.454 1.99261992619926 271 32 99 2 1 270 566 835 Naegleria gruberi ubiquinol-cytochrome c reductase iron-sulfur subunit mitochondrial precursor (NAEGRDRAFT_78817), partial mRNA blastn 540 311 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;