RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA939415" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA939415 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3466236 3466236 PRJNA939415_P_NODE_36623_length_298_cov_4.662222_g36201_i0 PRJNA939415 36623 298 4.662222 13.89342156 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 148 3.4299999999999996e-31   NTclustered gi|2107813725|gb|CP070823.1| 2026742 g36201 i0 86.131 0.88255033557047 137 19 46 0 13 149 124124 124260 MAG: Gemmatimonadetes bacterium isolate bin113 chromosome blastn 263 148 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
4744760 4744760 PRJNA939415_P_NODE_93324_length_243_cov_0.905882_g92902_i0 PRJNA939415 93324 243 0.905882 2.20129326 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 52.8 0.022   NTclustered gi|2874254163|emb|OY970395.1| 412054 g92902 i0 100 0.11522633744856 28 0 12 0 172 199 3902468 3902495 MAG: uncultured Gemmatimonadales bacterium isolate MFD05684.bin.c.1 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
7293936 7293936 PRJNA939415_P_NODE_54986_length_278_cov_7.946341_g54564_i0 PRJNA939415 54986 278 7.946341 22.09082798 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 75 5.46e-9   NTclustered gi|226088597|dbj|AP009153.1| 379066 g54564 i0 85.915 4.91726618705036 71 8 25 2 1 70 512740 512809 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 1367 75 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
9843555 9843555 PRJNA939415_P_NODE_45168_length_288_cov_3.400000_g44746_i0 PRJNA939415 45168 288 3.4 9.792 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 196 1.16e-45   NTclustered gi|2874254163|emb|OY970395.1| 412054 g44746 i0 81.377 46.7881944444444 247 40 85 6 45 288 938789 939032 MAG: uncultured Gemmatimonadales bacterium isolate MFD05684.bin.c.1 genome assembly, chromosome: 1 blastn 13475 196 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
9843895 9843895 PRJNA939415_P_NODE_63268_length_270_cov_3.664975_g62846_i0 PRJNA939415 63268 270 3.664975 9.8954325 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 403 5.93e-108   NTclustered gi|575456455|gb|CP007128.1| 861299 g62846 i0 93.704 296.611111111111 270 15 100 2 1 270 3042966 3043233 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 80085 403 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
13669050 13669050 PRJNA939415_P_NODE_40431_length_294_cov_2.352941_g40009_i0 PRJNA939415 40431 294 2.352941 6.91764654 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 130 1.22e-25   NTclustered gi|2874253995|emb|OY970320.1| 246130 g40009 i0 75.472 1.81292517006803 318 51 100 22 1 294 1635433 1635119 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 533 130 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
16218290 16218290 PRJNA939415_P_NODE_31893_length_310_cov_2.860759_g31471_i0 PRJNA939415 31893 310 2.860759 8.8683529 Roseisolibacter agri 2014610 Bacteria Bacteria 481 3.12e-131   NTclustered gi|1679775923|ref|NR_163645.1| 2014610 g31471 i0 95.161 101.087096774194 310 4 100 3 1 310 39 337 Roseisolibacter agri strain AW1220 16S ribosomal RNA, partial sequence blastn 31337 481 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter agri
16219395 16219395 PRJNA939415_P_NODE_93793_length_242_cov_3.248521_g93371_i0 PRJNA939415 93793 242 3.248521 7.86142082 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 126 1.2699999999999999e-24   NTclustered gi|2621703971|emb|OY762926.1| 2026742 g93371 i0 89.109 32.4834710743802 101 11 42 0 71 171 1216497 1216597 MAG: Gemmatimonadota bacterium isolate 6e3ee631-f785-49ea-85f7-2f24cfa146af genome assembly, chromosome: 1 blastn 7861 126 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;