RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA939415" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA939415 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4743838 4743838 PRJNA939415_P_NODE_40704_length_293_cov_3.995455_g40282_i0 PRJNA939415 40704 293 3.995455 11.70668315 uncultured Chloroflexota bacterium 166587 Bacteria Bacteria 56.5 0.002   NTclustered gi|2531948664|emb|OY282448.1| 166587 g40282 i0 100 0.484641638225256 30 0 10 0 161 190 274962 274991 MAG: uncultured Chloroflexota bacterium genome assembly, chromosome: 1 blastn 142 56.5 1 Bacteria   Bacillati Chloroflexota         uncultured Chloroflexota bacterium
10185266 10185266 PRJNA939415_P_NODE_53628_length_280_cov_1.951691_g53206_i0 PRJNA939415 53628 280 1.951691 5.4647348 Bacteria 2 Bacteria Bacteria 113 1.17e-20   NTclustered gi|2874253725|emb|OY969567.1| 1672391 g53206 i0 94.521 11.4107142857143 73 4 26 0 58 130 3116247 3116175 MAG: uncultured Chloroflexia bacterium isolate MFD01561.bin.c.1 genome assembly, chromosome: 1 blastn 3195 113 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
18766641 18766641 PRJNA939415_P_NODE_111655_length_199_cov_5.150794_g111233_i0 PRJNA939415 111655 199 5.150794 10.25008006 Dehalococcoidales bacterium 2026733 Bacteria Bacteria 62.1 2.87e-5   NTclustered gi|2107938826|gb|CP070800.1| 2026733 g111233 i0 91.111 0.874371859296482 45 4 23 0 81 125 2047437 2047481 MAG: Dehalococcoidales bacterium isolate bin137 chromosome blastn 174 62.1 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales     Dehalococcoidales bacterium
20043189 20043189 PRJNA939415_P_NODE_98756_length_236_cov_4.865031_g98334_i0 PRJNA939415 98756 236 4.865031 11.48147316 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 62.1 3.52e-5   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g98334 i0 87.273 0.822033898305085 55 5 23 2 171 224 11054604 11054551 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 194 62.1 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
23868741 23868741 PRJNA939415_P_NODE_86019_length_248_cov_5.571429_g85597_i0 PRJNA939415 86019 248 5.571429 13.81714392 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 78.7 3.7e-10   NTclustered gi|2874253812|emb|OY969796.1| 1672391 g85597 i0 91.228 0.229838709677419 57 5 23 0 192 248 2341752 2341808 MAG: uncultured Chloroflexia bacterium isolate MFD01872.bin.1.103 genome assembly, chromosome: 1 blastn 57 78.7 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
25141785 25141785 PRJNA939415_P_NODE_49300_length_284_cov_2.786730_g48878_i0 PRJNA939415 49300 284 2.78673 7.9143132 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 185 2.4799999999999993e-42   NTclustered gi|2893356072|emb|OZ220495.1| 2026734 g48878 i0 80.913 53.2253521126761 241 40 84 6 45 282 2097029 2096792 MAG: Dehalococcoidia bacterium isolate 23c5d8d9-c01e-4714-bf51-3e77b66f12ef genome assembly, chromosome: 1 blastn 15116 185 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
25142459 25142459 PRJNA939415_P_NODE_86880_length_248_cov_1.628571_g86458_i0 PRJNA939415 86880 248 1.628571 4.03885608 Tepidiformaceae bacterium 3022862 Bacteria Bacteria 165 2.76e-36   NTclustered gi|2893358447|emb|OZ220739.1| 3022862 g86458 i0 88.889 66.7943548387097 135 13 54 2 99 232 895518 895651 MAG: Tepidiformaceae bacterium isolate ddb3cf28-bb63-44a4-8fd1-08202229d10a genome assembly, chromosome: 1 blastn 16565 165 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae   Tepidiformaceae bacterium
25482826 25482826 PRJNA939415_P_NODE_111020_length_202_cov_4.449612_g110598_i0 PRJNA939415 111020 202 4.449612 8.98821624 FCB group 1783270 Bacteria Bacteria 52.8 0.018   NTclustered gi|1985684846|gb|CP069394.1| 2026724 g110598 i0 100 0.415841584158416 28 0 14 0 92 119 13701 13674 Chloroflexi bacterium strain ZRK35 chromosome, complete genome blastn 84 52.8 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;