RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA939370" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA939370 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7634297 7634297 PRJNA939370_S_NODE_3066_length_163_cov_1.640351_g3014_i0 PRJNA939370 3066 163 1.640351 2.67377213 Fusobacterium 848 Bacteria Bacteria 302 1.22e-77   NTclustered gi|2704983719|gb|CP077132.1| 851 g3014 i0 100 485.570552147239 163 0 100 0 1 163 1986627 1986465 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 79148 302 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
17833640 17833640 PRJNA939370_S_NODE_1954_length_195_cov_1.534247_g1902_i0 PRJNA939370 1954 195 1.534247 2.99178165 Fusobacterium 848 Bacteria Bacteria 350 5.34e-92   NTclustered gi|2706071841|gb|CP077111.1| 76857 g1902 i0 98.974 472.015384615385 195 2 100 0 1 195 1920009 1920203 Fusobacterium polymorphum strain KCOM1275 chromosome, complete genome blastn 92043 350 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
19107555 19107555 PRJNA939370_S_NODE_715_length_347_cov_1.785235_g663_i0 PRJNA939370 715 347 1.785235 6.19476545 Fusobacterium 848 Bacteria Bacteria 630 3.319999999999999e-176   NTclustered gi|2445153921|gb|CP117797.1| 851 g663 i0 99.424 486.651296829971 347 2 100 0 1 347 470098 469752 Fusobacterium nucleatum strain FNA chromosome, complete genome blastn 168868 636 0.990566037735849 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;